Mercurial > repos > siwaa > azodyn

comparison tool_AZODYN.xml @ 10:3afd67a53aa0 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/cc4805e05de7961381e752d96eff34bf06144f48 commit cc4805e05de7961381e752d96eff34bf06144f48-dirty"
author patrick_chabrier
date Mon, 17 Jun 2024 11:03:24 +0000
parents ead8d0406cdb
children 34f022d90021
comparison
equal deleted inserted replaced
9:ead8d0406cdb 10:3afd67a53aa0
1 <tool id="AZODYN" name="AZODYN crop models simulations" version="1.4.0"> 1 <tool id="AZODYN" name="AZODYN crop models simulations" version="1.4.1">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:image-azodynsunflo-1.4</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:image-azodynsunflo-1.4</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 unzip ${input_meteo}; 7 unzip ${input_meteo};
8 dos2unix --allow-chown *
8 dos2unix -n ${file_input} internal_inputAZODYN.csv; 9 dos2unix -n ${file_input} internal_inputAZODYN.csv;
9 dos2unix -n ${file_outputs} internal_outputAZODYN.csv; 10 dos2unix -n ${file_outputs} internal_outputAZODYN.csv;
10 /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R ${crop_type} AZODYN internal_inputAZODYN.csv internal_outputAZODYN.csv \${GALAXY_SLOTS:-2}"; 11 /bin/bash -c "Rscript --verbose /data/rAzodynSunflo.R ${crop_type} AZODYN internal_inputAZODYN.csv internal_outputAZODYN.csv \${GALAXY_SLOTS:-2}";
11 zip temp_results.zip simresults_*.txt; 12 zip temp_results.zip simresults_*.txt;
12 cp temp_results.zip ${simresults}; 13 cp temp_results.zip ${simresults};