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comparison tool_defaults_AZODYN.xml @ 5:49c988e63e6b draft

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"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/3a14800d8c700f5acdf49d564adc9fe820aa1c25 commit 3a14800d8c700f5acdf49d564adc9fe820aa1c25-dirty"
author siwaa
date Thu, 25 Aug 2022 10:47:57 +0000
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4:5deede146fb6 5:49c988e63e6b
1 <tool id="AZODYNdefaults" name="AZODYN crop models default inputs and outputs" version="1.0.0">
2 <description></description>
3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:ub2004_vle21</container>
5 </requirements>
6 <command detect_errors="aggressive">
7 /bin/bash -c "Rscript --verbose /data/rDefaultAzodynSunflo.R ${crop_type} AZODYN";
8 cp file_default_input.csv ${inputs};
9 cp file_default_output.csv ${outputs};
10 </command>
11 <inputs>
12 <param name="crop_type" type="select" label="Select crop">
13 <option value="AzodynPea.vpz">Pea</option>
14 <option value="AzodynWheat.vpz">Wheat</option>
15 <option value="AzodynBarley.vpz">Barley</option>
16 </param>
17 </inputs>
18 <outputs>
19 <data format="csv" name="inputs" label="Azodyn default inputs"/>
20 <data format="csv" name="outputs" label="Azodyn default outputs"/>
21 </outputs>
22 <tests>
23 <test>
24 <param name="crop_type" value="AzodynPea.vpz" />
25 <output name="inputs">
26 <assert_contents>
27 <has_text text="simulation_engine.duration;simulation_engine.begin" />
28 <has_text text="Breteniere_1991_2018.csv;AZODYN" />
29 </assert_contents>
30 </output>
31 <output name="outputs">
32 <assert_contents>
33 <has_text text="id;path;integration" />
34 <has_text text="Des_cumul;view/AzodynPea:Frost.Des_cumul;all" />
35 </assert_contents>
36 </output>
37 </test>
38 </tests>
39 <help><![CDATA[
40 Azodyn crop models default inputs and outputs provider
41
42 Full documentation is available here : https://siwaa.toulouse.inrae.fr/ in section "Tool Tuto > Azodyn tool"
43 ]]>
44 </help>
45 </tool>
46