Mercurial > repos > siwaa > azodyn

comparison tool_AZODYN.xml @ 2:e6bbaf03133e draft

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"planemo upload for repository https://forgemia.inra.fr/record/RECORD/-/tree/master/misc/galaxy_tools commit 187cf18876225903f7ab06915374a0277ad83130-dirty"
author siwaa
date Wed, 17 Nov 2021 14:23:35 +0000
parents 97f5c404a9d6
children d1070fee9dc4
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1:97f5c404a9d6 2:e6bbaf03133e
1 <tool id="AZODYN" name="AZODYN crop models simulations" version="1.0.0"> 1 <tool id="AZODYN" name="AZODYN crop models simulations" version="1.0.0">
2 <description></description> 2 <description></description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:latest</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/record/record/azodyn_sunflo:187cf18876225903f7ab06915374a0277ad83130</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 unzip ${input_meteo}; 7 unzip ${input_meteo};
8 /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R ${crop_type} AZODYN ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}"; 8 /bin/bash -c "Rscript --verbose /data/RECORD/misc/docker/rAzodynSunflo.R ${crop_type} AZODYN ${file_input} ${file_outputs} \${GALAXY_SLOTS:-2}";
9 zip temp_results.zip simresults_*.txt; 9 zip temp_results.zip simresults_*.txt;