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comparison getdata.xml @ 6:9382bc075d81 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/33995c93db6828fb0c4e4c27964bb34497cbe9fb commit 33995c93db6828fb0c4e4c27964bb34497cbe9fb-dirty"
author siwaa
date Thu, 12 May 2022 13:10:08 +0000
parents 409bcbdc92c8
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5:409bcbdc92c8 6:9382bc075d81
1 <tool id="CarboSeqGetData" name="CarboSeqGetData" version="1.0.0"> 1 <tool id="CarboSeqGetData" name="CarboSeqGetData" version="1.0.0">
2 <description>To retrieve the data from the soil db</description> 2 <description>To retrieve the data from the soil db</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/getdatacsopraaial:.git/refs/tags/image-1.0</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/getdatacsopraaial:image-1.0</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 bash -e -c "R -e \"source('/work/csopralibs/scripts/R/getDataCsopraAIAL.r', echo=TRUE)\" 2>&1; cp ./*.RData ${simulation_data}" 7 bash -e -c "R -e \"source('/work/csopralibs/scripts/R/getDataCsopraAIAL.r', echo=TRUE)\" 2>&1; cp ./*.RData ${simulation_data}"
8 ]]> 8 ]]>
9 </command> 9 </command>