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comparison getdata.xml @ 10:f60bb19f7880 draft default tip

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/37cec685ade2bbd92376a2a1716ace3b9beab6f9 commit 37cec685ade2bbd92376a2a1716ace3b9beab6f9-dirty"
author siwaa
date Mon, 21 Nov 2022 16:00:30 +0000
parents b75e5e1a0646
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9:b75e5e1a0646 10:f60bb19f7880
1 <tool id="CarboSeqGetData" name="CarboSeqGetData" version="1.0.0">
2 <description>To retrieve the data from the soil db</description>
3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/getdatacsopraaial:image-1.0</container>
5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[
7 bash -e -c "R -e \"source('/work/csopralibs/scripts/R/getDataCsopraAIAL.r', echo=TRUE)\" 2>&1; cp ./*.RData ${simulation_data}"
8 ]]>
9 </command>
10 <outputs>
11 <data format='rdata' name="simulation_data" label="CarboSeq simulations data"/>
12 </outputs>
13 <tests>
14 <test>
15 <output name="simulation_data">
16 <assert_contents>
17 <has_size value="216929" delta="100" />
18 </assert_contents>
19 </output>
20 </test>
21 </tests>
22 <help>
23 the CarboSeqGetData tool
24 ========================
25
26 credits
27 -------
28
29 - Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
30 - Tool Maintainer: Eric Casellas eric.casellas@inrae.fr
31 - Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
32 - Copyright: INRAE
33 </help>
34 </tool>