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comparison runsim.xml @ 10:f60bb19f7880 draft default tip

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/37cec685ade2bbd92376a2a1716ace3b9beab6f9 commit 37cec685ade2bbd92376a2a1716ace3b9beab6f9-dirty"
author siwaa
date Mon, 21 Nov 2022 16:00:30 +0000
parents eff04f7eec9f
children
comparison
equal deleted inserted replaced
9:b75e5e1a0646 10:f60bb19f7880
1 <tool id="CarboSeqRunSim" name="CarboSeqRunSim" version="1.1.0"> 1 <tool id="CarboSeqRunSim" name="CarboSeqRunSim" version="1.2.0">
2 <description>To run the simulator</description> 2 <description>To run the simulator</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:1.1.0</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:1.2.0</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 bash -e -c "mkdir inputs && 7 bash -e -c "mkdir inputs &&
8 cp ${meteo_data} inputs/meteo.csv && 8 cp ${meteo_data} inputs/meteo.csv &&
9 cp ${crop_data} inputs/crop.csv && 9 cp ${crop_data} inputs/crop.csv &&
39 <param name="meteo_data" value="inputs/client.files/meteo.csv" ftype="csv" /> 39 <param name="meteo_data" value="inputs/client.files/meteo.csv" ftype="csv" />
40 <param name="crop_data" value="inputs/client.files/crop.csv" ftype="csv" /> 40 <param name="crop_data" value="inputs/client.files/crop.csv" ftype="csv" />
41 <param name="soil_data" value="inputs/client.files/soil.csv" ftype="csv" /> 41 <param name="soil_data" value="inputs/client.files/soil.csv" ftype="csv" />
42 <output name="run_output"> 42 <output name="run_output">
43 <assert_contents> 43 <assert_contents>
44 <has_size value="5462" delta="100" /> 44 <has_size value="4741" delta="100" />
45 </assert_contents> 45 </assert_contents>
46 </output> 46 </output>
47 </test> 47 </test>
48 </tests> 48 </tests>
49 <help> 49 <help>