--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/findidpairs.xml	Mon Sep 26 15:54:42 2022 +0000
@@ -0,0 +1,45 @@
+<tool id="CarboSeqFindIdPairs" name="CarboSeqFindIdPairs" version="1.0.0">
+  <description>To get IdPairs</description>
+  <requirements>
+    <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:1.1.0</container>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+  bash -e -c "mkdir inputs &&
+  cp ${meteo_data} inputs/meteo.csv &&
+  cp ${crop_data} inputs/crop.csv &&
+  cp ${soil_data} inputs/soil.csv &&
+  mkdir output &&
+  export CSOPRALIBS_PARAM_OUTPUT=\$(realpath -s output) &&
+  export CSVMAPPER_INPUT_DIR=\$(realpath -s inputs) &&
+  Rscript /usr/local/src/myscripts/usercases/find-idPairs/run.r &&
+  cp output/id-idSucc-pairs.csv ${findpairs_output}"
+    ]]>
+  </command>
+  <inputs>
+    <param name="meteo_data" type="data" format="csv" label="Meteo data (csv file)"/>
+    <param name="crop_data" type="data" format="csv" label="Crop data (csv file)"/>
+    <param name="soil_data" type="data" format="csv" label="Soil data (csv file)"/>
+  </inputs>
+<outputs>
+  <data format='csv' name="findpairs_output" label="IdPairs"/>
+</outputs>
+<tests>
+  <test>
+    <param name="meteo_data" value="inputs/client.files/meteo.csv" ftype="csv" />
+    <param name="crop_data" value="inputs/client.files/crop.csv" ftype="csv" />
+    <param name="soil_data" value="inputs/client.files/soil.csv" ftype="csv" />
+    <output name="findpairs_output" file="outputs/id-idSucc-pairs.csv" />
+  </test>
+</tests>
+<help>
+the CarboSeq find-idpairs tool
+==============================
+
+credits
+-------
+
+-  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
+-  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
+-  Copyright: INRAE
+</help>
+</tool>