--- a/runrothc.xml	Mon Sep 26 16:04:20 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-<tool id="CarboSeqRunRothC" name="CarboSeqRunRothC" version="1.0.0">
-  <description>To run the RothC simulator</description>
-  <requirements>
-    <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/testcaserothc:image-rothc-1.0</container>
-  </requirements>
-  <command detect_errors="exit_code"><![CDATA[
-  bash -e -c "cp -r /work/csopralibs . &&
-  cp ${simulation_data} CsopraAIALInTestCase.RData &&
-  cp ${climat_data} csopralibs/data/Csopra/Climat_Csopra/CSOPRA_CLIMAT_MOIS_SAFRAN_2416.txt &&
-  cp /work/csopralibs/scripts/R/testCaseRothC.r testCaseRothC.r &&
-  sed -i 's/source(\"~\/\.Rpro/homeS <- \".\" #source(\"~\/\.Rpro/' testCaseRothC.r &&
-  sed -i 's/setwd(homeS/setwd(getwd()/' testCaseRothC.r  &&
-  sed -i 's/load(\"~\/tmp/load(\"\./' testCaseRothC.r &&
-  R -e \"source('./testCaseRothC.r', echo=TRUE)\" > ${log} &&
-  cp Rplots.pdf ${plot}"
-    ]]>
-  </command>
-  <inputs>
-    <param name="simulation_data" type="data" format="rdata" label="CarboSeq simulations data (rdata file)"/>
-    <param name="climat_data" type="data" format="txt" label="CarboSeq climat data (txt file)"/>
-  </inputs>
-<outputs>
-  <data format='txt' name="log" label="CarboSeq RothC log"/>
-  <data format='pdf' name="plot" label="CarboSeq plot"/>
-</outputs>
-<tests>
-  <test>
-    <param name="simulation_data" value="inputs/Galaxy1-CarboSeq_simulations_data.rdata" ftype="rdata" />
-    <param name="climat_data" value="inputs/CSOPRA_CLIMAT_MOIS_SAFRAN_2416.txt" ftype="txt" />
-    <output name="plot">
-    <assert_contents>
-      <has_size value="27045" delta="100" />
-    </assert_contents>
-    </output>
-    <output name="log">
-      <assert_contents>
-      <has_line line="> simTrial$runner$run()" />
-    </assert_contents>
-    </output>
-  </test>
-
-</tests>
-<help>
-the CarboSeqGetData tool
-========================
-
-credits
--------
-
--  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
--  Tool Maintainer: Eric Casellas eric.casellas@inrae.fr
--  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
--  Copyright: INRAE
-</help>
-</tool>