Mercurial > repos > siwaa > carboseq

<tool id="CarboSeqGetData" name="CarboSeqGetData" version="1.0.0">
  <description>To retrieve the data from the soil db</description>
  <requirements>
    <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/getdatacsopraaial:latest</container>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[
    bash -e -c "R -e \"source('/work/csopralibs/scripts/R/getDataCsopraAIAL.r', echo=TRUE)\" 2>&1; cp ./*.RData ${simulation_data}"
    ]]>
  </command>
<outputs>
  <data format='rdata' name="simulation_data" label="CarboSeq simulations data"/>
</outputs>
<tests>
  <test>
    <output name="simulation_data">
    <assert_contents>
      <has_size value="216929" delta="100" />
    </assert_contents>
    </output>
  </test>
</tests>
<help>
the CarboSeqGetData tool
========================

credits
-------

-  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
-  Tool Maintainer: Eric Casellas eric.casellas@inrae.fr
-  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
-  Copyright: INRAE
</help>
</tool>
author	siwaa
date	Wed, 06 Apr 2022 10:43:05 +0000
parents	dbf5f81e2ed6
children