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changeset 0:dbf5f81e2ed6 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq commit c96c7945990db33f6c24b87e529c767f4a5ce25a"
author siwaa
date Wed, 06 Apr 2022 09:51:51 +0000
parents
children 305f3408f763
files getdata.xml getdata.xml.bak
diffstat 2 files changed, 68 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/getdata.xml	Wed Apr 06 09:51:51 2022 +0000
@@ -0,0 +1,34 @@
+<tool id="CarboSeqGetData" name="CarboSeqGetData" version="1.0.0">
+  <description>To retrieve the data from the soil db</description>
+  <requirements>
+    <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/getdatacsopraaial</container>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+    bash -e -c "R -e \"source('/work/csopralibs/scripts/R/getDataCsopraAIAL.r', echo=TRUE)\" 2>&1; cp ./*.RData ${simulation_data}"
+    ]]>
+  </command>
+<outputs>
+  <data format='rdata' name="simulation_data" label="CarboSeq simulations data"/>
+</outputs>
+<tests>
+  <test>
+    <output name="simulation_data">
+    <assert_contents>
+      <has_size value="216929" delta="100" />
+    </assert_contents>
+    </output>
+  </test>
+</tests>
+<help>
+the CarboSeqGetData tool
+========================
+
+credits
+-------
+
+-  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
+-  Tool Maintainer: Eric Casellas eric.casellas@inrae.fr
+-  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
+-  Copyright: INRAE
+</help>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/getdata.xml.bak	Wed Apr 06 09:51:51 2022 +0000
@@ -0,0 +1,34 @@
+<tool id="CarboSeqGetData" name="CarboSeqGetData" version="1.0.0">
+  <description>To retrieve the data from the soil db</description>
+  <requirements>
+    <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/getdatacsopraaial</container>
+  </requirements>
+  <command detect_errors="exit_code"><![CDATA[
+    bash -e -c "R -e \"source('/work/csopralibs/scripts/R/getDataCsopraAIAL.r', echo=TRUE)\" 2>&1; cp ./*.RData ${simulation_data}"
+    ]]>
+  </command>
+<outputs>
+  <data format='rdata' name="simulation_data" label="CarboSeq simulations data"/>
+</outputs>
+<tests>
+  <test>
+    <output name="simulation_data">
+    <assert_contents>
+      <has_size value="216929" delta="100" />
+    </assert_contents>
+    </output>
+  </test>
+</tests>
+<help>
+the CarboSeqGetData tool
+========================
+
+credits
+-------
+
+-  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
+-  Tool Maintainer: Eric Casellas eric.casellas@inrae.fr
+-  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
+-  Copyright: INRAE
+</help>
+</tool>