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comparison carboseqSimulator.xml @ 9:2af4b1e46d90 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/0376c8590ba7b401f91db9be50a49e03cf5044fb/toos/CarboSeqSimulator commit 0376c8590ba7b401f91db9be50a49e03cf5044fb-dirty"
author siwaa
date Tue, 17 Sep 2024 10:41:39 +0000
parents 5fdc9d0c223b
children 097985b1b7c6
comparison
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8:5fdc9d0c223b 9:2af4b1e46d90
1 <tool id="CarboSeqSimulator" name="CarboSeqSimulator" version="1.0.14"> 1 <tool id="CarboSeqSimulator" name="CarboSeqSimulator" version="1.0.15">
2 <description>To run the CarboSeq simulator</description> 2 <description>To run the CarboSeq simulator</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:siwaa</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:main</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 (env | grep DOCKER_IMAGE) && 7 (env | grep DOCKER_IMAGE) &&
8 printf " Image Reg : \$s\n" \$(env | grep DOCKER_IMAGE) && 8 printf " Image Reg : \$s\n" \$(env | grep DOCKER_IMAGE) &&
9 bash -e -c "mkdir output && 9 bash -e -c "mkdir output &&
30 <test> 30 <test>
31 <param name="input" value="input/40Sites.zip" ftype="zip" /> 31 <param name="input" value="input/40Sites.zip" ftype="zip" />
32 <param name="semantifier" value="modeltoolbox_sem_local" /> 32 <param name="semantifier" value="modeltoolbox_sem_local" />
33 <output name="output" ftype="rdata" > 33 <output name="output" ftype="rdata" >
34 <assert_contents> 34 <assert_contents>
35 <has_size value="38654" negate="false" /> 35 <has_size value="1202" negate="false" />
36 <has_size value="0" negate="true" /> 36 <has_size value="0" negate="true" />
37 </assert_contents> 37 </assert_contents>
38 </output> 38 </output>
39 </test> 39 </test>
40 <test> 40 <test>
41 <param name="input" value="input/40Sites.zip" ftype="zip" /> 41 <param name="input" value="input/40Sites.zip" ftype="zip" />
42 <param name="semantifier" value="modeltoolbox_sem_remote" /> 42 <param name="semantifier" value="modeltoolbox_sem_remote" />
43 <output name="output" ftype="rdata" > 43 <output name="output" ftype="rdata" >
44 <assert_contents> 44 <assert_contents>
45 <has_size value="38654" negate="false" /> 45 <has_size value="1202" negate="false" />
46 <has_size value="0" negate="true" /> 46 <has_size value="0" negate="true" />
47 </assert_contents> 47 </assert_contents>
48 </output> 48 </output>
49 </test> 49 </test>
50 </tests> 50 </tests>