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comparison carboseqSimulator.xml @ 18:ce2b35fc669b draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/8e9c862054881aae267afdc3f7945ed0916505bc/toos/CarboSeqSimulator commit 8e9c862054881aae267afdc3f7945ed0916505bc-dirty"
author siwaa
date Fri, 10 Jan 2025 14:34:35 +0000
parents 56b0bf51585a
children 813ea6294046
comparison
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17:56b0bf51585a 18:ce2b35fc669b
1 <tool id="CarboSeqSimulator" name="CarboSeqSimulator" version="1.0.19"> 1 <tool id="CarboSeqSimulator" name="CarboSeqSimulator" version="1.0.20">
2 <description>To run the CarboSeq simulator</description> 2 <description>To run the CarboSeq simulator</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:main</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:main</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
7 (env | grep DOCKER_IMAGE) && 7 (env | grep COMMIT) &&
8 printf " Image Reg : \$s\n" \$(env | grep DOCKER_IMAGE) && 8 printf " Image Reg : \$s\n" \$(env | grep DOCKER_IMAGE) &&
9 export "TMPDIR=\$(realpath -s tmp)" && 9 export "TMPDIR=\$(realpath -s tmp)" &&
10 bash -e -c " 10 bash -e -c "
11 echo \$TMPDIR && 11 echo \$TMPDIR &&
12 mkdir tmp && 12 mkdir tmp &&