Mercurial > repos > siwaa > carboseq_s

diff carboseqSimulator.xml @ 7:366449cab681 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/b4b11a86a9c43b3dd4a3d27af9f2d99463cdbffa/toos/CarboSeqSimulator commit b4b11a86a9c43b3dd4a3d27af9f2d99463cdbffa-dirty"
author siwaa
date Thu, 29 Aug 2024 14:58:19 +0000
parents f9183e245cdb
children 5fdc9d0c223b
line wrap: on
line diff
--- a/carboseqSimulator.xml	Thu Aug 29 10:11:24 2024 +0000
+++ b/carboseqSimulator.xml	Thu Aug 29 14:58:19 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="CarboSeqSimulator" name="CarboSeqSimulator" version="1.0.12">
+<tool id="CarboSeqSimulator" name="CarboSeqSimulator" version="1.0.13">
   <description>To run the CarboSeq simulator</description>
   <requirements>
     <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:siwaa</container>
@@ -12,7 +12,7 @@
   cp /usr/local/src/myscripts/start_server.sh . &&
   cp -r /usr/local/src/myscripts/config_mappers . &&
   cp -r /usr/local/src/myscripts/data . &&
-  Rscript /usr/local/src/myscripts/scenarios/run-sim-perf/run.r --srcDir=\$(realpath -s input) --srcOut=\$(realpath -s output) --semPath=\$(realpath -s .) --part=${semantifier} --NBCores=\${GALAXY_SLOTS:-4}&&
+  Rscript $__tool_directory__/run.r --srcDir=\$(realpath -s input) --srcOut=\$(realpath -s output) --semPath=\$(realpath -s .) --part=${semantifier} --NBCores=\${GALAXY_SLOTS:-4}&&
   cp output/* ${output}"
     ]]>
   </command>