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view carboseqUnsplit.xml @ 10:20886bc40659 draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/b1cafd3eb61b631ee0b1f8f6c5ef2f9a0e2b4ccf/toos/CarboSeqSimulator commit b1cafd3eb61b631ee0b1f8f6c5ef2f9a0e2b4ccf-dirty"
author siwaa
date Tue, 17 Sep 2024 16:01:18 +0000
parents 2af4b1e46d90
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<tool id="CarboSeqUnsplit" name="CarboSeqUnsplit" version="1.0.4">
  <description>To unsplit CarboSeq results</description>
  <requirements>
    <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq/carboseq_r_4_siwaa</container>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[
  Rscript $__tool_directory__/carboseqUnsplit.R #for $input in $inputList# $input #end for# &&
  cp csopraRes.Rdata $output
    ]]>
  </command>
  <inputs>
    <param name="inputList" type="data_collection" collection_type="list" label="CarboSeq results list (zip of .rdata)"/>
  </inputs>
  <outputs>
    <data format='rdata' name="output" label="CarboSeq output (rdata)"/>
  </outputs>
<tests>
</tests>
<help>
the CarboSeq CarboseqSimulator tool
===================================

credits
-------
-  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
-  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
-  Copyright: INRAE
</help>
</tool>