<tool id="CarboSeqUnsplit" name="CarboSeqUnsplit" version="1.0.1">
  <description>To unsplit CarboSeq results</description>
  <requirements>
    <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:siwa</container>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[
  mkdir inputs &&
  #for $input in $inputList
  cp $input inputs &&
  #end for
  Rscript $__tool_directory__/carboseqUnsplit.R &&
  cp csopraRes.Rdata $output
    ]]>
  </command>
  <inputs>
    <param name="inputList" type="data_collection" collection_type="list" label="CarboSeq results list (zip of .rdata)"/>
  </inputs>
  <outputs>
    <data format='rdata' name="output" label="CarboSeq output (rdata)"/>
  </outputs>
<tests>
</tests>
<help>
the CarboSeq CarboseqSimulator tool
===================================

credits
-------
-  Wrapper Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
-  Tool Site: https://forgemia.inra.fr/carboseq/record-projet-carboseq
-  Copyright: INRAE
</help>
</tool>