# HG changeset patch
# User siwaa
# Date 1733822092 0
# Node ID de71663fbce4896b84ab1c67503ff587f4a2a90d
# Parent  e455667fe22f8177f1cda0707b00c192983cdf7e
"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/a1d5502ae76ad46070a072641c73b7a51d21c82f/toos/CarboSeqSimulator commit a1d5502ae76ad46070a072641c73b7a51d21c82f-dirty"

diff -r e455667fe22f -r de71663fbce4 carboseqSimulator.xml
--- a/carboseqSimulator.xml	Fri Sep 20 09:00:02 2024 +0000
+++ b/carboseqSimulator.xml	Tue Dec 10 09:14:52 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="CarboSeqSimulator" name="CarboSeqSimulator" version="1.0.16">
+<tool id="CarboSeqSimulator" name="CarboSeqSimulator" version="1.0.17">
   <description>To run the CarboSeq simulator</description>
   <requirements>
     <container type="singularity">docker://registry.forgemia.inra.fr/csopra/csopralibs:main</container>
@@ -36,7 +36,7 @@
       <param name="semantifier" value="modeltoolbox_sem_local" />
       <output name="output" ftype="rdata" >
       	<assert_contents>
-	  <has_size value="1202" negate="false" />
+	  <has_size value="1334" negate="false" />
 	  <has_size value="0" negate="true" />
 	</assert_contents>
       </output>
@@ -46,7 +46,7 @@
       <param name="semantifier" value="modeltoolbox_sem_remote" />
       <output name="output" ftype="rdata" >
       	<assert_contents>
-	  <has_size value="1202" negate="false" />
+	  <has_size value="1334" negate="false" />
 	  <has_size value="0" negate="true" />
 	</assert_contents>
       </output>
diff -r e455667fe22f -r de71663fbce4 carboseqSplit.xml
--- a/carboseqSplit.xml	Fri Sep 20 09:00:02 2024 +0000
+++ b/carboseqSplit.xml	Tue Dec 10 09:14:52 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="CarboSeqSplit" name="CarboSeqSplit" version="1.0.3">
+<tool id="CarboSeqSplit" name="CarboSeqSplit" version="1.0.4">
   <description>To split input data of CarboSeq</description>
   <requirements>
     <container type="singularity">docker://registry.forgemia.inra.fr/carboseq/record-projet-carboseq:latest</container>
@@ -16,8 +16,78 @@
       <discover_datasets pattern="__name_and_ext__" directory="outputs"/>
     </collection>
   </outputs>
-<tests>
-</tests>
+  <tests>
+    <test>
+      <param name="inputFile" value="input/40Sites/40Sites.zip" />
+      <param name="chunkSize" value="10" />          
+      <output_collection name="splited" type="list" count="4">
+        <element name="input_1">
+	  <assert_contents>
+	    <has_archive_member path="crop.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="201" />
+	    </has_archive_member>
+	    <has_archive_member path="soil.csv">
+	      <has_text text="ID,LAT" />
+	      <has_n_lines n="11" />
+	    </has_archive_member>
+	    <has_archive_member path="units.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="81" />
+	    </has_archive_member>
+	  </assert_contents>	  
+        </element>
+        <element name="input_2">
+	  <assert_contents>
+	    <has_archive_member path="crop.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="201" />
+	    </has_archive_member>
+	    <has_archive_member path="soil.csv">
+	      <has_text text="ID,LAT" />
+	      <has_n_lines n="11" />
+	    </has_archive_member>
+	    <has_archive_member path="units.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="81" />
+	    </has_archive_member>
+	  </assert_contents>	  
+        </element>
+        <element name="input_3">
+	  <assert_contents>
+	    <has_archive_member path="crop.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="201" />
+	    </has_archive_member>
+	    <has_archive_member path="soil.csv">
+	      <has_text text="ID,LAT" />
+	      <has_n_lines n="11" />
+	    </has_archive_member>
+	    <has_archive_member path="units.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="81" />
+	    </has_archive_member>
+	  </assert_contents>	  
+        </element>
+        <element name="input_4">
+	  <assert_contents>
+	    <has_archive_member path="crop.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="201" />
+	    </has_archive_member>
+	    <has_archive_member path="soil.csv">
+	      <has_text text="ID,LAT" />
+	      <has_n_lines n="11" />
+	    </has_archive_member>
+	    <has_archive_member path="units.csv">
+	      <has_text text="ID,NUM,CROP" />
+	      <has_n_lines n="81" />
+	    </has_archive_member>
+	  </assert_contents>	  
+        </element>
+      </output_collection>
+    </test>
+    </tests>
 <help>
 the CarboSeq CarboseqSimulator tool
 ===================================
diff -r e455667fe22f -r de71663fbce4 run.r
--- a/run.r	Fri Sep 20 09:00:02 2024 +0000
+++ b/run.r	Tue Dec 10 09:14:52 2024 +0000
@@ -157,12 +157,11 @@
 }
 
 ppi <- list(
-			 weatherRetrievalMethod = "service",
-		     srcDir = srcDir,
-		 	 # srcDirOutput = srcDirOutput,
-			 doSemantify = DS,
-			 weatherRetrievalURL = "https://coby.infosol.inrae.fr:8080/climate",
-			 semantifierServiceURL = url
+			weatherRetrievalMethod = "service",
+		    srcDir = srcDir,
+			doSemantify = DS,
+			weatherRetrievalURL = "https://coby.infosol.inrae.fr:8080/spatial-data/temporal/climate",
+			semantifierServiceURL = url
 	    )
 
 
diff -r e455667fe22f -r de71663fbce4 test-data/input/40Sites/40Sites.zip
Binary file test-data/input/40Sites/40Sites.zip has changed