Mercurial > repos > siwaa > carboseq_s

changeset 12:7e43dc776bda draft

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"planemo upload for repository https://forgemia.inra.fr/carboseq/record-projet-carboseq/-/tree/6d8408bc51a9a3e037181e8ca08212a5c96f2321/toos/CarboSeqSimulator commit 6d8408bc51a9a3e037181e8ca08212a5c96f2321-dirty"
author siwaa
date Thu, 19 Sep 2024 15:58:11 +0000
parents 097985b1b7c6
children 9ad79c2d8e0b
files carboseqSimulator.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/carboseqSimulator.xml	Thu Sep 19 11:11:46 2024 +0000
+++ b/carboseqSimulator.xml	Thu Sep 19 15:58:11 2024 +0000
@@ -9,7 +9,8 @@
   <command detect_errors="exit_code"><![CDATA[
   (env | grep DOCKER_IMAGE) &&
   printf " Image  Reg   : \$s\n" \$(env | grep DOCKER_IMAGE) &&
-  bash -e -c "mkdir output &&
+  bash -e -c "mkdir tmp &&
+  mkdir output &&
   unzip -d input ${input} &&
   cp /usr/local/src/myscripts/semantifier.jar . &&
   cp /usr/local/src/myscripts/start_server.sh . &&