Mercurial > repos > siwaa > dairyfit_subselect

comparison subselect.xml @ 3:8844ca8db01e draft default tip

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"planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit 20df1773e1dc142f1784c148d8885d1f3266eea4"
author siwaa
date Mon, 16 Feb 2026 16:07:02 +0000
parents 7cd77499d854
children
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2:7cd77499d854 3:8844ca8db01e
1 <tool id="subSelect" name="subSelect" version="1.0.1"> 1 <tool id="subSelect" name="subSelect" version="1.0.2">
2 <description>netcdf spatial subselection</description> 2 <description>netcdf spatial subselection</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forge.inrae.fr/dairyfit/lot1/chaine_traitement_indicateur:latest 4 <container type="singularity">docker://registry.forge.inrae.fr/dairyfit/lot1/chaine_traitement_indicateur:latest
5 </container> 5 </container>
6 </requirements> 6 </requirements>
13 shpFile=\$(ls | grep shp); 13 shpFile=\$(ls | grep shp);
14 cd ..; 14 cd ..;
15 conda run --no-capture-output -n dairyfit 15 conda run --no-capture-output -n dairyfit
16 python /data/1_subselect_Bretagne.py 16 python /data/1_subselect_Bretagne.py
17 --input_dir VariableInputFolder 17 --input_dir VariableInputFolder
18 --pattern "*.nc"
18 --shapefile areaFolder/\$shpFile 19 --shapefile areaFolder/\$shpFile
19 --counties "$counties" 20 --counties "$counties"
20 --output_dir VariableOutputFolder; 21 --output_dir VariableOutputFolder;
21 cp \$(find VariableOutputFolder -type f) $climateVar 22 cp \$(find VariableOutputFolder -type f) $climateVar
22 ]]> 23 ]]>