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comparison subselect.xml @ 2:7cd77499d854 draft default tip

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"planemo upload for repository https://forge.inrae.fr/dairyfit/lot2/dairyfit-toolbox commit a9c9a79dd99148422b87efce42818f7831287cdb"
author siwaa
date Wed, 11 Feb 2026 20:26:38 +0000
parents 42116d508352
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1:42116d508352 2:7cd77499d854
1 <tool id="subSelect" name="subSelect" version="1.0.0"> 1 <tool id="subSelect" name="subSelect" version="1.0.1">
2 <description>netcdf spatial subselection</description> 2 <description>netcdf spatial subselection</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forge.inrae.fr/dairyfit/lot1/chaine_traitement_indicateur:latest 4 <container type="singularity">docker://registry.forge.inrae.fr/dairyfit/lot1/chaine_traitement_indicateur:latest
5 </container> 5 </container>
6 </requirements> 6 </requirements>
14 cd ..; 14 cd ..;
15 conda run --no-capture-output -n dairyfit 15 conda run --no-capture-output -n dairyfit
16 python /data/1_subselect_Bretagne.py 16 python /data/1_subselect_Bretagne.py
17 --input_dir VariableInputFolder 17 --input_dir VariableInputFolder
18 --shapefile areaFolder/\$shpFile 18 --shapefile areaFolder/\$shpFile
19 --counties "$counties"
19 --output_dir VariableOutputFolder; 20 --output_dir VariableOutputFolder;
20 cp \$(find VariableOutputFolder -type f) $climateVar 21 cp \$(find VariableOutputFolder -type f) $climateVar
21 ]]> 22 ]]>
22 </command> 23 </command>
23 <inputs> 24 <inputs>
24 <param name="selecTag" type="text" value="" label="Selection Name"/> 25 <param name="selecTag" type="text" value="" label="Selection Name"/>
25 <param name="climateModelVariable" type="data" format="netcdf" label="Select a climate model variable file (nc file)"/> 26 <param name="climateModelVariable" type="data" format="netcdf" label="Select a climate model variable file (nc file)"/>
26 <param name="area" type="data" format="tgz" label="Select a flat archive of a area shapeFile folder (tgz file)"/> 27 <param name="area" type="data" format="tgz" label="Select a flat archive of a area shapeFile folder (tgz file)"/>
28 <param name="counties" type="text" value="Côtes-d'Armor Finistère Ille-et-Vilaine Morbihan Loire-Atlantique Mayenne Sarthe Manche" label="List of counties" sanitize="False"/>
27 </inputs> 29 </inputs>
28 <outputs> 30 <outputs>
29 <data format="netcdf" name="climateVar" 31 <data format="netcdf" name="climateVar"
30 label="${selecTag}${climateModelVariable.name}"> 32 label="${selecTag}${climateModelVariable.name}">
31 </data> 33 </data>