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comparison erecord_file.xml @ 2:9e8f5f220917 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/erecord-deploy/-/tree/main/galaxy-tools/erecord_file commit 2bd91617d46a1c454a7a167113cc605bdd1b3ff2-dirty
author siwaa
date Thu, 15 Feb 2024 14:44:47 +0000
parents 9f7e56f56079
children
comparison
equal deleted inserted replaced
1:9f7e56f56079 2:9e8f5f220917
3 <description>erecord returning .json + maybe .zip or .xls</description> 3 <description>erecord returning .json + maybe .zip or .xls</description>
4 4
5 <requirements> 5 <requirements>
6 6
7 <!-- singularity --> 7 <!-- singularity -->
8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/erecord-deploy/erecord_rep0_vle2:53e4840cd66e45761db955f69203284761fd6df8</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/erecord-deploy/rep_recordb:9d6ea1defd50dd63fe036a7545a9ea527572192e</container>
9
10 <!-- image locale -->
11 <!-- container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/erecord-deploy/containers/_fab_SIMG/rep_recordb.simg</container-->
9 12
10 </requirements> 13 </requirements>
11 14
12 <command detect_errors="aggressive"> 15 <command detect_errors="aggressive">
13 <![CDATA[ 16 <![CDATA[
27 #end if 30 #end if
28 31
29 cp WS/OUT/output.json ${output_json}; 32 cp WS/OUT/output.json ${output_json};
30 33
31 #if $request_condition.action_name == 'get_vpz_experiment': 34 #if $request_condition.action_name == 'get_vpz_experiment':
35 touch WS/OUT/experiment.xls;
32 cp WS/OUT/experiment.xls ${experiment}; 36 cp WS/OUT/experiment.xls ${experiment};
33 #elif $request_condition.action_name == 'post_vpz_experiment': 37 #elif $request_condition.action_name == 'post_vpz_experiment':
38 touch WS/OUT/experiment.xls;
34 cp WS/OUT/experiment.xls ${experiment}; 39 cp WS/OUT/experiment.xls ${experiment};
35 #elif $request_condition.action_name == 'get_vpz_report_conditions': 40 #elif $request_condition.action_name == 'get_vpz_report_conditions':
41 touch WS/OUT/conditions.xls;
36 cp WS/OUT/conditions.xls ${conditions}; 42 cp WS/OUT/conditions.xls ${conditions};
37 #elif $request_condition.action_name == 'post_vpz_report_conditions': 43 #elif $request_condition.action_name == 'post_vpz_report_conditions':
44 touch WS/OUT/conditions.xls;
38 cp WS/OUT/conditions.xls ${conditions}; 45 cp WS/OUT/conditions.xls ${conditions};
39 #elif $request_condition.action_name == 'get_vpz_report': 46 #elif $request_condition.action_name == 'get_vpz_report':
47 touch WS/OUT/report.zip;
40 cp WS/OUT/report.zip ${report}; 48 cp WS/OUT/report.zip ${report};
41 #elif $request_condition.action_name == 'post_vpz_report': 49 #elif $request_condition.action_name == 'post_vpz_report':
50 touch WS/OUT/report.zip;
42 cp WS/OUT/report.zip ${report}; 51 cp WS/OUT/report.zip ${report};
43 #end if 52 #end if
44 53
45 ]]> 54 ]]>
46 </command> 55 </command>