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comparison erecord_file.xml @ 1:9f7e56f56079 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/erecord-deploy/-/tree/main/galaxy-tools/erecord_file commit ac10d874b1abe19a8c44f861b2f180ff20976b39
author siwaa
date Wed, 13 Dec 2023 21:45:47 +0000
parents 27e7e4d38e44
children 9e8f5f220917
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0:27e7e4d38e44 1:9f7e56f56079
3 <description>erecord returning .json + maybe .zip or .xls</description> 3 <description>erecord returning .json + maybe .zip or .xls</description>
4 4
5 <requirements> 5 <requirements>
6 6
7 <!-- singularity --> 7 <!-- singularity -->
8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/erecord-deploy/erecord_rep0_vle2:82d8fea607be20851e194828125785fb0f7e96d0</container> 8 <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/erecord-deploy/erecord_rep0_vle2:53e4840cd66e45761db955f69203284761fd6df8</container>
9 9
10 </requirements> 10 </requirements>
11 11
12 <command detect_errors="aggressive"> 12 <command detect_errors="aggressive">
13 <![CDATA[ 13 <![CDATA[
14 . /PYVENV/bin/activate;
14 15
15 echo "action_name VAUT $request_condition.action_name"; 16 echo "action_name VAUT $request_condition.action_name";
16 #if $request_condition.action_name == 'post_vpz_experiment': 17 #if $request_condition.action_name == 'post_vpz_experiment':
17 /bin/bash -c "python3 $__tool_directory__/main_file.py -action ${request_condition.action_name} -data ${input_json} -datafolder ${datafolder} -experimentfile ${experimentfile}"; 18 /bin/bash -c "python3 $__tool_directory__/main_file.py -action ${request_condition.action_name} -data ${input_json} -datafolder ${datafolder} -experimentfile ${experimentfile}";
18 #elif $request_condition.action_name == 'post_vpz_report': 19 #elif $request_condition.action_name == 'post_vpz_report':