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comparison main_file.py @ 3:aa5c088856c8 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/erecord-deploy/-/tree/main/galaxy-tools/erecord_file commit 490623122691651ac91c33d75ea1898189be7512-dirty
author siwaa
date Thu, 15 Feb 2024 15:24:53 +0000
parents 9e8f5f220917
children 4c45f7b92955
comparison
equal deleted inserted replaced
2:9e8f5f220917 3:aa5c088856c8
56 if MAIN_DEBUG: r["sys.argv"] = sys.argv # debug 56 if MAIN_DEBUG: r["sys.argv"] = sys.argv # debug
57 57
58 data = dict() 58 data = dict()
59 json_response = dict() 59 json_response = dict()
60 60
61 # default configuration + maybe some modifications
62 config = erecord_api.conf() # default (vle-2.0.0 version)
63 config.DB_add_vpz(vpz_id=1312, vpzname="wwdm.vpz", pkgname="wwdm")
64
61 try : 65 try :
62 parser = argparse.ArgumentParser() 66 parser = argparse.ArgumentParser()
63 67
64 # -action 68 # -action
65 available_action_list = ActionViewMixin.get_action_list() 69 available_action_list = ActionViewMixin.get_action_list()
108 112
109 data['action'] = action 113 data['action'] = action
110 114
111 r["data"] = data 115 r["data"] = data
112 116
113 # default configuration + maybe some modifications 117 # configuration
114 config = erecord_api.conf() # default (vle-2.0.0 version)
115 config.DB_add_vpz(vpz_id=1312, vpzname="wwdm.vpz", pkgname="wwdm")
116 if MAIN_DEBUG: r["config"] = config.get_as_dict() # debug 118 if MAIN_DEBUG: r["config"] = config.get_as_dict() # debug
117 119
118 r_init = erecord_api.init(config) 120 r_init = erecord_api.init(config)
119 if MAIN_DEBUG: r["init"] = r_init # debug 121 if MAIN_DEBUG: r["init"] = r_init # debug
120 122
153 response = erecord_api.error_case(data=data, msg=PM, e=e) 155 response = erecord_api.error_case(data=data, msg=PM, e=e)
154 json_response = json.loads(response) 156 json_response = json.loads(response)
155 157
156 r["response"] = json_response 158 r["response"] = json_response
157 159
158 # Restitution : json file 160 try :
159 jsonoutput_filepath = os.path.join(config.out_path, config.jsonoutput_filename) 161 # Restitution : json file
160 with open(jsonoutput_filepath, "w") as outfile: 162 jsonoutput_filepath = os.path.join(config.out_path,
161 json.dump(r, outfile) 163 config.jsonoutput_filename)
164 with open(jsonoutput_filepath, "w") as outfile:
165 json.dump(r, outfile)
166 except :
167 print(PM, " -- error when trying to open output json file --")
162 168