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comparison main_file.py @ 9:21b334392530 draft default tip

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/erecord-deploy/-/tree/main/galaxy-tools/erecord_file commit c3cff9470de2b6b133d30faefbc0521f458a30d7-dirty
author siwaa
date Thu, 15 Feb 2024 17:37:47 +0000
parents b4601b7cf763
children
comparison
equal deleted inserted replaced
8:b4601b7cf763 9:21b334392530
38 38
39 MAIN_DEBUG=False # True for more information returned 39 MAIN_DEBUG=False # True for more information returned
40 40
41 import argparse 41 import argparse
42 import json 42 import json
43
44 import erecord.api.erecord as erecord_api 43 import erecord.api.erecord as erecord_api
45 from erecord.api.erecord import initt
46 from erecord.api.erecord import conf
47 from erecord.api.erecord import action
48 from erecord.api.erecord import error_case
49
50 from erecord.api.cmn.views_mixins import ActionViewMixin 44 from erecord.api.cmn.views_mixins import ActionViewMixin
51 from erecord.api.cmn.utils.errors import build_error_content 45 from erecord.api.cmn.utils.errors import build_error_content
52 46
53 import os 47 import os
54 import shutil 48 import shutil
63 57
64 data = dict() 58 data = dict()
65 json_response = dict() 59 json_response = dict()
66 60
67 # default configuration + maybe some modifications 61 # default configuration + maybe some modifications
68 config = conf() ## erecord_api.conf() # default (vle-2.0.0 version) 62 config = erecord_api.conf() # default (vle-2.0.0 version)
69 config.DB_add_vpz(vpz_id=1312, vpzname="wwdm.vpz", pkgname="wwdm") 63 config.DB_add_vpz(vpz_id=1312, vpzname="wwdm.vpz", pkgname="wwdm")
70 64
71 try : 65 try :
72 parser = argparse.ArgumentParser() 66 parser = argparse.ArgumentParser()
73 67
121 r["data"] = data 115 r["data"] = data
122 116
123 # configuration 117 # configuration
124 if MAIN_DEBUG: r["config"] = config.get_as_dict() # debug 118 if MAIN_DEBUG: r["config"] = config.get_as_dict() # debug
125 119
126 r_init = init(config) ## erecord_api.init(config) 120 r_init = erecord_api.init(config)
127 if MAIN_DEBUG: r["init"] = r_init # debug 121 if MAIN_DEBUG: r["init"] = r_init # debug
128 122
129 response = action(config, data) ## erecord_api.action(config, data) 123 response = erecord_api.action(config, data)
130 json_response = json.loads(response) 124 json_response = json.loads(response)
131 125
132 # Restitution : file (experiment.xls, conditions.xls, report.zip) 126 # Restitution : file (experiment.xls, conditions.xls, report.zip)
133 # Note : 127 # Note :
134 # tool.xml command "touch" the file (in case of failed to be copied here) 128 # tool.xml command "touch" the file (in case of failed to be copied here)
156 cnt = build_error_content(exception=e, errormsg=msg) 150 cnt = build_error_content(exception=e, errormsg=msg)
157 json_response["error PLUS"] = str(cnt) 151 json_response["error PLUS"] = str(cnt)
158 152
159 except Exception as e : 153 except Exception as e :
160 154
161 response = error_case(data=data, msg=PM, e=e) ## erecord_api.error_case(data=data, msg=PM, e=e) 155 response = erecord_api.error_case(data=data, msg=PM, e=e)
162 json_response = json.loads(response) 156 json_response = json.loads(response)
163 157
164 r["response"] = json_response 158 r["response"] = json_response
165 159
166 try : 160 try :