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view erecord_json.xml @ 0:8a0659f23df7 draft
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/erecord-deploy/-/tree/main/galaxy-tools/erecord_json commit 88beb443a737b4c4d42bb0011a26a0acf535c366
author | siwaa |
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date | Tue, 12 Dec 2023 17:37:35 +0000 |
parents | |
children | d87b8a1073ad |
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<tool id="erecord_json" name="erecord_json" version="1.0.0"> <description>erecord returning .json</description> <requirements> <!-- singularity --> <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/erecord-deploy/erecord_rep0_vle2:82d8fea607be20851e194828125785fb0f7e96d0</container> </requirements> <command detect_errors="aggressive"> <![CDATA[ /bin/bash -c "python3 $__tool_directory__/main_json.py -data ${input_json} -datafolder ${datafolder}"; cp WS/OUT/output.json ${output_json}; ]]> </command> <inputs> <param name="input_json" optional="true" type="data" format="json" label="Input json file"/> <param name="datafolder" optional="true" type="data" format="zip" label="Add a datafolder zip file (available and used only in 'post_vpz_output' or 'post_vpz_inout' cases)" help="Precisions sur forme du dossier..."/> </inputs> <outputs> <data format="json" name="output_json" label="jsonoutput"/> </outputs> <tests> </tests> <help><![CDATA[ erecord_json.xml ================ Actions: ------- - Available : - 'get_vpz_input' 'post_vpz_input' - 'get_vpz_output' 'post_vpz_output' - 'get_vpz_inout' 'post_vpz_inout' - 'get_pkg_list' 'get_pkg_vpz_list' 'get_pkg_data_list' - 'help' - Unavailable (actions with 2 output files) : - 'get_vpz_experiment' 'post_vpz_experiment' - 'get_vpz_report_conditions' 'post_vpz_report_conditions' - 'get_vpz_report' 'post_vpz_report' Code: ---- - main_json.py Inputs: ------- - data json file (optional) (json file, param type="data") This file contains the action value - datafolder (optional) (only in 'post_vpz_output', 'post_vpz_inout' cases) Outputs: -------- - data json file (no other file returned) Credits: -------- - Author: Nathalie Rousse nathalie.rousse@inrae.fr - Copyright: INRAE ]]> </help> </tool>