annotate src/MY_predatorPrey.gaml @ 16:4117e2f0a591 draft

planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 12:02:59 +0000
parents f895e266b37a
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f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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1 /**
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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2 * Name: Breeding of prey and predator agents
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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3 * Author:
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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4 * Description: 6th part of the tutorial : Predator Prey
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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5 * Tags: reproduce, myself, self
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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6 */
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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7 model prey_predator
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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8
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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9 global {
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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10 int nb_preys_init <- 200;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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11 int nb_predators_init <- 20;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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12 float prey_max_energy <- 1.0;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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13 float prey_max_transfer <- 0.1;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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14 float prey_energy_consum <- 0.05;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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15 float predator_max_energy <- 1.0;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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16 float predator_energy_transfer <- 0.5;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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17 float predator_energy_consum <- 0.02;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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18 float prey_proba_reproduce <- 0.01;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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19 int prey_nb_max_offsprings <- 5;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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20 float prey_energy_reproduce <- 0.5;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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21 float predator_proba_reproduce <- 0.01;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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22 int predator_nb_max_offsprings <- 3;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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23 float predator_energy_reproduce <- 0.5;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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24 int nb_preys -> {length(prey)};
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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25 int nb_predators -> {length(predator)};
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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26 bool is_batch <- false;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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27
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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28 init {
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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29 create prey number: nb_preys_init;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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30 create predator number: nb_predators_init;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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31 write(self);
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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32 }
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33
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34 reflex stop_simulation when: ((nb_preys = 0) or (nb_predators = 0)) and !is_batch {
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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35 do pause;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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36 }
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37 }
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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38
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39 species generic_species {
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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40 float size <- 1.0;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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41 rgb color;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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42 float max_energy;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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43 float max_transfer;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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44 float energy_consum;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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45 float proba_reproduce;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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46 int nb_max_offsprings;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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47 float energy_reproduce;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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48 vegetation_cell my_cell <- one_of(vegetation_cell);
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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49 float energy <- rnd(max_energy) update: energy - energy_consum max: max_energy;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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50
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51 init {
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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52 location <- my_cell.location;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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53 }
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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54
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55 reflex basic_move {
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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56 my_cell <- one_of(my_cell.neighbors2);
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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57 location <- my_cell.location;
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58 }
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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59
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60 reflex eat {
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61 energy <- energy + energy_from_eat();
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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62 }
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63
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64 reflex die when: energy <= 0 {
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65 do die;
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66 }
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67
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68 reflex reproduce when: (energy >= energy_reproduce) and (flip(proba_reproduce)) {
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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69 int nb_offsprings <- rnd(1, nb_max_offsprings);
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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70 create species(self) number: nb_offsprings {
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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71 my_cell <- myself.my_cell;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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72 location <- my_cell.location;
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73 energy <- myself.energy / nb_offsprings;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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74 }
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75
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76 energy <- energy / nb_offsprings;
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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77 }
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78
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79 float energy_from_eat {
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80 return 0.0;
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81 }
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82
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83 aspect base {
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84 draw circle(size) color: color;
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85 }
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86
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87
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88
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89
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90 reflex save_result when: (nb_preys > 0) and (nb_predators > 0){
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91 save ("cycle: "+ cycle + "; nbPreys: " + nb_preys
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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92 + "; minEnergyPreys: " + (prey min_of each.energy)
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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93 + "; maxSizePreys: " + (prey max_of each.energy)
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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94 + "; nbPredators: " + nb_predators
f895e266b37a planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef
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95 + "; minEnergyPredators: " + (predator min_of each.energy)
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96 + "; maxSizePredators: " + (predator max_of each.energy))
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97 to: "results.txt" type: "text" rewrite: (cycle = 0) ? true : false;
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98 }
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99
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101
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103 }
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104
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105 species prey parent: generic_species {
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106 rgb color <- #blue;
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107 float max_energy <- prey_max_energy;
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108 float max_transfer <- prey_max_transfer;
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109 float energy_consum <- prey_energy_consum;
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110 float proba_reproduce <- prey_proba_reproduce;
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111 int nb_max_offsprings <- prey_nb_max_offsprings;
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112 float energy_reproduce <- prey_energy_reproduce;
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113
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114 float energy_from_eat {
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115 float energy_transfer <- 0.0;
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116 if(my_cell.food > 0) {
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117 energy_transfer <- min([max_transfer, my_cell.food]);
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118 my_cell.food <- my_cell.food - energy_transfer;
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119 }
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120 return energy_transfer;
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121 }
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122 }
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123
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124 species predator parent: generic_species {
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125 rgb color <- #red;
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126 float max_energy <- predator_max_energy;
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127 float energy_transfer <- predator_energy_transfer;
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128 float energy_consum <- predator_energy_consum;
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129 float proba_reproduce <- predator_proba_reproduce;
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130 int nb_max_offsprings <- predator_nb_max_offsprings;
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131 float energy_reproduce <- predator_energy_reproduce;
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132
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133 float energy_from_eat {
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134 list<prey> reachable_preys <- prey inside (my_cell);
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135 if(! empty(reachable_preys)) {
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136 ask one_of (reachable_preys) {
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137 do die;
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138 }
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139 return energy_transfer;
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140 }
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141 return 0.0;
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142 }
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143 }
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144
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145 grid vegetation_cell width: 50 height: 50 neighbors: 4 {
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146 float max_food <- 1.0;
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147 float food_prod <- rnd(0.01);
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148 float food <- rnd(1.0) max: max_food update: food + food_prod;
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149 rgb color <- rgb(int(255 * (1 - food)), 255, int(255 * (1 - food))) update: rgb(int(255 * (1 - food)), 255, int(255 * (1 - food)));
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150 list<vegetation_cell> neighbors2 <- (self neighbors_at 2);
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151 }
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152
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153 experiment prey_predator type: gui {
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154 parameter "Initial number of preys: " var: nb_preys_init min: 0 max: 1000 category: "Prey";
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155 parameter "Prey max energy: " var: prey_max_energy category: "Prey";
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156 parameter "Prey max transfer: " var: prey_max_transfer category: "Prey";
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157 parameter "Prey energy consumption: " var: prey_energy_consum category: "Prey";
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158 parameter "Initial number of predators: " var: nb_predators_init min: 0 max: 200 category: "Predator";
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159 parameter "Predator max energy: " var: predator_max_energy category: "Predator";
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160 parameter "Predator energy transfer: " var: predator_energy_transfer category: "Predator";
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161 parameter "Predator energy consumption: " var: predator_energy_consum category: "Predator";
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162 parameter 'Prey probability reproduce: ' var: prey_proba_reproduce category: 'Prey';
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163 parameter 'Prey nb max offsprings: ' var: prey_nb_max_offsprings category: 'Prey';
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164 parameter 'Prey energy reproduce: ' var: prey_energy_reproduce category: 'Prey';
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165 parameter 'Predator probability reproduce: ' var: predator_proba_reproduce category: 'Predator';
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166 parameter 'Predator nb max offsprings: ' var: predator_nb_max_offsprings category: 'Predator';
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167 parameter 'Predator energy reproduce: ' var: predator_energy_reproduce category: 'Predator';
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168
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169 output {
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170 display main_display {
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171 grid vegetation_cell border: #black;
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172 species prey aspect: base;
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173 species predator aspect: base;
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174 }
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175
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176 monitor "Number of preys" value: nb_preys;
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177 monitor "Number of predators" value: nb_predators;
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178 }
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179 }
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180
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181 experiment Optimization type: batch repeat: 2 keep_seed: true until: ( time > 200 ) {
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182 parameter "Predator energy reproduce:" var: predator_energy_reproduce min: 0.25 max: 1.0 step: 0.25;
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183 parameter "Batch mode:" var: is_batch <- true;
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184
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185 method tabu maximize: nb_preys + nb_predators iter_max: 10 tabu_list_size: 3;
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186
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187
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188 reflex save_results_explo {
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189 ask simulations {
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190 save [int(self),prey_max_transfer,prey_energy_reproduce,predator_energy_transfer,predator_energy_reproduce,self.nb_predators,self.nb_preys]
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191 to: "results.csv" format:csv rewrite: (int(self) = 0) ? true : false header: true;
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192 }
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193 }
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194 }
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195