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comparison gama_tool.xml @ 9:39b499a105c9 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 67d85c013c62c16392b4796af86836b1334f2eef-dirty
author siwaa
date Fri, 07 Jun 2024 17:01:37 +0000
parents 6a1c0aabe956
children e9f88963b517
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8:6a1c0aabe956 9:39b499a105c9
1 <tool id="gama_tool" name="gama" version="1.0.0g"> 1 <tool id="gama_tool" name="gama" version="1.0.0h">
2 2
3 <description>tool for GAMA Platform</description> 3 <description>tool for GAMA Platform</description>
4 4
5 <requirements> 5 <requirements>
6 6
11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_gama/use/GAMA/containers/gama.simg</container --> 11 <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_gama/use/GAMA/containers/gama.simg</container -->
12 </requirements> 12 </requirements>
13 13
14 <command detect_errors="aggressive"> 14 <command detect_errors="aggressive">
15 <![CDATA[ 15 <![CDATA[
16 mkdir ./javatmpdir; chmod 777 ./javatmpdir;
16 cp -fr /opt/gama-platform .; 17 cp -fr /opt/gama-platform .;
17 cp $__tool_directory__/src/MY_predatorPrey.gaml gama-platform/headless/samples/predatorPrey/.; 18 cp $__tool_directory__/src/MY_predatorPrey.gaml gama-platform/headless/samples/predatorPrey/.;
18 cp $__tool_directory__/src/MY_gama-headless.sh gama-platform/headless/.; 19 cp $__tool_directory__/src/MY_gama-headless.sh gama-platform/headless/.;
19 cp $__tool_directory__/src/MY_sequential_example.py .; 20 cp $__tool_directory__/src/MY_sequential_example.py .;
20 cp $__tool_directory__/src/cmd_gama_headless.sh .; 21 cp $__tool_directory__/src/cmd_gama_headless.sh .;