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comparison ESSAISENCOURS.txt @ 17:5a94c8c7c8cc draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 12:22:11 +0000
parents 4117e2f0a591
children 1437cd0df25b
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16:4117e2f0a591 17:5a94c8c7c8cc
20 #------------------------------------------------------------------------------ 20 #------------------------------------------------------------------------------
21 21
22 gama.def: 22 gama.def:
23 + chmod -R 777 /opt 23 + chmod -R 777 /opt
24 24
25 <tool id="gama_tool" name="gama" version="1.0.0o"> 25 <tool id="gama_tool" name="gama" version="1.0.0p">
26 26
27 registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3 27 registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3
28 28
29 /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 400 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt; 29 /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
30
31 chmod -R 777 gama-platform;
32
33 vim MY_gama-headless.sh :
34 MY_JAVA_DIR=./_java
35 ...
36 echo "TRACE MY_gama-headless.sh: pwd:"
37 pwd;
38 pwd > RRR.txt
39
40 if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=${MY_JAVA_DIR} -Djava.util.prefs.userRoot=${MY_JAVA_USER_PREFS_DIR} -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then
41
42 #------------------------------------------------------------------------------
30 43
31 Singularity> echo $JAVA_HOME 44 Singularity> echo $JAVA_HOME
32 /opt/openjdk-17 45 /opt/openjdk-17
33 Singularity> which java 46 Singularity> which java
34 /opt/openjdk-17/bin/java 47 /opt/openjdk-17/bin/java
35 Singularity> java -version 48 Singularity> java -version
36 openjdk version "17-ea" 2021-09-14 49 openjdk version "17-ea" 2021-09-14
37 OpenJDK Runtime Environment (build 17-ea+14) 50 OpenJDK Runtime Environment (build 17-ea+14)
38 OpenJDK 64-Bit Server VM (build 17-ea+14, mixed mode, sharing) 51 OpenJDK 64-Bit Server VM (build 17-ea+14, mixed mode, sharing)
39 52
40 vim MY_gama-headless.sh :
41 MY_JAVA_DIR=./_java
42 ...
43 echo "TRACE MY_gama-headless.sh: pwd:"
44 pwd;
45 pwd > RRR.txt
46
47 if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=${MY_JAVA_DIR} -Djava.util.prefs.userRoot=${MY_JAVA_USER_PREFS_DIR} -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then
48