view ESSAISENCOURS.txt @ 19:855883e4a317 draft

planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty
author siwaa
date Mon, 10 Jun 2024 13:17:57 +0000
parents 1437cd0df25b
children 13a692e5a445
line wrap: on
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#------------------------------------------------------------------------------
# ESSAIS Vendredi 7 juin
#------------------------------------------------------------------------------
<tool id="gama_tool" name="gama" version="1.0.0b">

8000 -> 6868

=> RES : tourne infini

#------------------------------------------------------------------------------
<tool id="gama_tool" name="gama" version="1.0.0j">

(ajout de traces dans TTT.txt)

-    /bin/bash cmd_gama_headless.sh > run_server.txt & sleep 20 && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
+    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 300 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;

#------------------------------------------------------------------------------
# ESSAIS Lundi 10 juin
#------------------------------------------------------------------------------

gama.def:
+  chmod -R 777 /opt

<tool id="gama_tool" name="gama" version="1.0.0p">

    registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3

    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 500 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;

    chmod -R 777 gama-platform;
 
vim MY_gama-headless.sh :
MY_JAVA_DIR=./_java   ...
if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=${MY_JAVA_DIR} -Djava.util.prefs.userRoot=${MY_JAVA_USER_PREFS_DIR} -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then


MY_sequential_example.py:
MY_SERVER_URL = "http://127.0.0.1"

#------------------------------------------------------------------------------

Singularity> echo $JAVA_HOME
/opt/openjdk-17
Singularity> which java
/opt/openjdk-17/bin/java
Singularity> java -version
openjdk version "17-ea" 2021-09-14
OpenJDK Runtime Environment (build 17-ea+14)
OpenJDK 64-Bit Server VM (build 17-ea+14, mixed mode, sharing)