# HG changeset patch
# User siwaa
# Date 1718015888 0
# Node ID 5667e00be2aa4f718692ef2e34aed2f01b2ba2aa
# Parent  e7772bdae78df8dd1b81e52ff509fb8c5d808d27
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty

diff -r e7772bdae78d -r 5667e00be2aa ESSAISENCOURS.txt
--- a/ESSAISENCOURS.txt	Mon Jun 10 10:15:22 2024 +0000
+++ b/ESSAISENCOURS.txt	Mon Jun 10 10:38:08 2024 +0000
@@ -22,7 +22,7 @@
 gama.def:
 +  chmod -R 777 /opt
 
-<tool id="gama_tool" name="gama" version="1.0.0m">
+<tool id="gama_tool" name="gama" version="1.0.0n">
 
     registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3
 
@@ -44,7 +44,9 @@
 mkdir -p ./_java/.userPrefs
 #chmod -R 755 ./_java
 chmod -R 777 ./_java
-export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs"
+#export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs"
+if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then
+
 
 
         SOURCES
diff -r e7772bdae78d -r 5667e00be2aa gama_tool.xml
--- a/gama_tool.xml	Mon Jun 10 10:15:22 2024 +0000
+++ b/gama_tool.xml	Mon Jun 10 10:38:08 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="gama_tool" name="gama" version="1.0.0m">
+<tool id="gama_tool" name="gama" version="1.0.0n">
 
   <description>tool for GAMA Platform</description>
 
diff -r e7772bdae78d -r 5667e00be2aa src/MY_gama-headless.sh
--- a/src/MY_gama-headless.sh	Mon Jun 10 10:15:22 2024 +0000
+++ b/src/MY_gama-headless.sh	Mon Jun 10 10:38:08 2024 +0000
@@ -68,14 +68,14 @@
 mkdir -p ./_java/.userPrefs
 #chmod -R 755 ./_java
 chmod -R 777 ./_java
-export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs"
+#export JAVA_OPTS="-Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs"
 
 
 
 
 #if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then
 MY_TEMP_DIR=.
-if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then
+if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=./_java -Djava.util.prefs.userRoot=./_java/.userPrefs -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then
     echo "Error in you command, here's the log :"
     cat $passWork/.metadata/.log
     exit 1