# HG changeset patch
# User siwaa
# Date 1718022131 0
# Node ID 5a94c8c7c8cccb4b07876da21450e4a454007a4a
# Parent  4117e2f0a5917f65679ca5d9bdf130e1660acbb1
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA/galaxy-tools commit 927c1d94ea613d36a1b4b8d048ba21ad43a6f55e-dirty

diff -r 4117e2f0a591 -r 5a94c8c7c8cc ESSAISENCOURS.txt
--- a/ESSAISENCOURS.txt	Mon Jun 10 12:02:59 2024 +0000
+++ b/ESSAISENCOURS.txt	Mon Jun 10 12:22:11 2024 +0000
@@ -22,11 +22,24 @@
 gama.def:
 +  chmod -R 777 /opt
 
-<tool id="gama_tool" name="gama" version="1.0.0o">
+<tool id="gama_tool" name="gama" version="1.0.0p">
 
     registry.forgemia.inra.fr/nathalie.rousse/use/gama:3fd4fb4b90db353af9bac01b99ee3b63220274c3
 
-    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 400 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
+    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
+
+    chmod -R 777 gama-platform;
+ 
+vim MY_gama-headless.sh :
+MY_JAVA_DIR=./_java
+...
+echo "TRACE MY_gama-headless.sh: pwd:"
+pwd;
+pwd > RRR.txt
+
+if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=${MY_JAVA_DIR} -Djava.util.prefs.userRoot=${MY_JAVA_USER_PREFS_DIR} -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then
+
+#------------------------------------------------------------------------------
 
 Singularity> echo $JAVA_HOME
 /opt/openjdk-17
@@ -37,12 +50,3 @@
 OpenJDK Runtime Environment (build 17-ea+14)
 OpenJDK 64-Bit Server VM (build 17-ea+14, mixed mode, sharing)
 
-vim MY_gama-headless.sh :
-MY_JAVA_DIR=./_java
-...
-echo "TRACE MY_gama-headless.sh: pwd:"
-pwd;
-pwd > RRR.txt
-
-if ! java -cp "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/../plugins/org.eclipse.equinox.launcher*.jar -Xms512m $memory -Djava.io.tmpdir=$MY_TEMP_DIR -Djava.util.prefs.systemRoot=${MY_JAVA_DIR} -Djava.util.prefs.userRoot=${MY_JAVA_USER_PREFS_DIR} -Djava.awt.headless=true org.eclipse.core.launcher.Main -configuration "$( dirname $( realpath "${BASH_SOURCE[0]}" ) )"/configuration -application msi.gama.headless.product -data $passWork "$@"; then
-
diff -r 4117e2f0a591 -r 5a94c8c7c8cc gama_tool.xml
--- a/gama_tool.xml	Mon Jun 10 12:02:59 2024 +0000
+++ b/gama_tool.xml	Mon Jun 10 12:22:11 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="gama_tool" name="gama" version="1.0.0o">
+<tool id="gama_tool" name="gama" version="1.0.0p">
 
   <description>tool for GAMA Platform</description>
 
@@ -14,12 +14,13 @@
   <command detect_errors="aggressive">
     <![CDATA[
     cp -fr /opt/gama-platform .;
+    chmod -R 777 gama-platform;
     cp $__tool_directory__/src/MY_predatorPrey.gaml gama-platform/headless/samples/predatorPrey/.;
     cp $__tool_directory__/src/MY_gama-headless.sh gama-platform/headless/.;
     cp $__tool_directory__/src/MY_sequential_example.py .;
     cp $__tool_directory__/src/cmd_gama_headless.sh .;
     cp $__tool_directory__/src/cmd_python_client.sh .;
-    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 400 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
+    /bin/bash cmd_gama_headless.sh > run_server.txt & date > TTT.txt && sleep 600 && echo "fin sleep" >> TTT.txt && date >> TTT.txt && /bin/bash cmd_python_client.sh $nb_preys_init $nb_predators_init $nb_more_steps > run_client.txt;
     cp run_server.txt ${run_server_txt};
     cp run_client.txt ${run_client_txt};
     cp gama-platform/headless/samples/predatorPrey/results.txt ${results_txt};
diff -r 4117e2f0a591 -r 5a94c8c7c8cc src/.MY_gama-headless.sh.swp
Binary file src/.MY_gama-headless.sh.swp has changed