Mercurial > repos > siwaa > gama_desc
annotate README.md @ 0:23b15c0eabff draft default tip
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
| author | siwaa |
|---|---|
| date | Mon, 18 Nov 2024 13:57:51 +0000 |
| parents | |
| children |
| rev | line source |
|---|---|
|
0
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
1 # Galaxy tool Util for GAMA model |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
2 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
3 # Desc |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
4 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
5 The **gama_desc.xml** Galaxy tool provides some utils for Gama models : |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
6 it produces a **description JSON data** of a **GAML model file**. |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
7 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
8 The **gama_desc.xml** Galaxy tool result can help to define inputs of the |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
9 **gama_legacy_gen** Galaxy tool |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
10 (see [more](./../../GAMA_HEADLESS_LEGACY/galaxy-tools/README.md)). |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
11 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
12 The **gama_desc.xml** Galaxy tool relies on a container providing **python3** |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
13 (only required). |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
14 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
15 # Galaxy tool gama_desc.xml |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
16 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
17 - **Inputs** : |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
18 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
19 - model_gaml |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
20 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
21 - **Outputs** : |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
22 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
23 - desc_json : information about the GAML model file |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
24 (names of the GAML model experiments of 'type': 'gui' ...) |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
25 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
26 - Note : **desc_json** (cf **names of experiments of 'type': 'gui'**) can |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
27 be useful to identify and choose the **experiment_name** input value of |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
28 the **gama_legacy_gen** Galaxy tool |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
29 (see [more](./../../GAMA_HEADLESS_LEGACY/galaxy-tools/README.md)). |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
30 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
31 # Local run by 'planemo serve' |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
32 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
33 **Installs** : |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
34 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
35 - Install Singularity : singularity version 3.8.5 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
36 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
37 - Install Galaxy code : |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
38 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
39 cd ~/DEVS |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
40 git clone https://github.com/galaxyproject/galaxy.git |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
41 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
42 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
43 Note : Galaxy requiring at least singularity 3.7 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
44 (cf singularity exec : --no-mount option) |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
45 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
46 - Install Planemo into a Python virtualenv : |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
47 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
48 pip3 install --upgrade pip wheel setuptools virtualenv |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
49 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
50 mkdir -p _fab |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
51 cd _fab |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
52 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
53 python3 -m venv _venv_planemo |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
54 source _venv_planemo/bin/activate |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
55 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
56 python3 -m pip install planemo |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
57 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
58 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
59 **Use** : |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
60 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
61 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
62 source _fab/_venv_planemo/bin/activate |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
63 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
64 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
65 - Survey : |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
66 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
67 htop |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
68 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
69 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
70 - Check tool syntax : |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
71 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
72 planemo lint --report_level all --fail_level error gama_desc.xml |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
73 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
74 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
75 - Run tool : |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
76 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
77 make serveGAMA_DESC |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
78 ``` |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
79 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
80 => http://127.0.0.1:9090 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
81 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
82 Use this Galaxy tool |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
83 ==================== |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
84 |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
85 See [use-tools](../use-tools). |
|
23b15c0eabff
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
siwaa
parents:
diff
changeset
|
86 |