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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_DESC/galaxy-tools commit 6b9b95de1fe709f27a28d83797f81e91469edf79-dirty
author siwaa
date Mon, 18 Nov 2024 13:57:51 +0000
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-1:000000000000 0:23b15c0eabff
1 #!/usr/bin/env python
2 # coding: utf-8
3
4 #-----------------------------------------------------------------
5 __author__ = "Nathalie Rousse (nathalie.rousse@inrae.fr)"
6 __copyright__ = "Copyright (C) 2024, Inrae (https://www.inrae.fr)"
7 __license__ = "MIT"
8 #-----------------------------------------------------------------
9
10 import json
11
12 # Produces a description JSON data from a GAML model file
13
14 ###############################################################################
15
16 def make_json_experiments_by_types(gaml_file_path):
17
18 # experiments contains lists of experiment names, by type
19 experiments = { "gui": [], "batch": [], "test": [], "memorize": [] }
20
21 with open(gaml_file_path, 'r') as f:
22 lines = f.readlines()
23
24 for line in lines:
25 experiment_name, type = None, None # default
26 line_kept = True # default
27 if "experiment" not in line : line_kept = False
28 if ("type " not in line and "type:" not in line) : line_kept = False
29
30 if line_kept :
31 words = line.split()
32 if words[0] == 'experiment' :
33 experiment_name = words[1]
34 else:
35 line_kept = False
36
37 if line_kept :
38 while " :" in line:
39 line = line.replace(" :", ":")
40 line = line.replace(":", ": ")
41 words = line.split()
42 for i,word in enumerate(words) :
43 if word == "type:" :
44 if words[i+1] in ("gui", "batch", "test", "memorize"):
45 type = words[i+1]
46 if line_kept and (experiment_name is not None) and (type is not None):
47 experiments[type].append(experiment_name)
48
49 return experiments
50
51 ###############################################################################
52
53 GAML_FILE_PATH = "model.gaml"
54 DESC_JSON_FILE_PATH = "desc.json"
55
56 try :
57 desc = dict()
58 experiments = make_json_experiments_by_types(gaml_file_path=GAML_FILE_PATH)
59 desc['experiments_by_types'] = experiments
60 print(desc)
61 with open(DESC_JSON_FILE_PATH, "w") as json_file:
62 json_file.write(json.dumps(desc))
63
64 except Exception as e :
65 errortype = type(e).__name__
66 errordetails = e.args
67 print("ERROR:", errortype, errordetails)
68
69 ###############################################################################