--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gama_legacy_gen.xml	Fri Aug 02 18:02:56 2024 +0000
@@ -0,0 +1,78 @@
+<tool id="gama_legacy_gen" name="gama_legacy_gen" version="1.0.0">
+
+  <description>tool generating XML file from GAML file (GAMA Headless Legacy mode)</description>
+
+  <requirements>
+
+    <!-- singularity --> 
+    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/gama_headless:e45168638437055475beeaa614611cb315a56fca</container>
+
+    <!-- image locale
+    <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_gama/use/GAMA_HEADLESS_LEGACY/containers/gama_headless.simg</container -->
+  </requirements>
+
+  <command detect_errors="aggressive">
+    <![CDATA[
+    mkdir -p software; mkdir -p inputs; mkdir -p outputs;
+    cp $__tool_directory__/src/MY_gama-headless.sh .;
+    cp $__tool_directory__/src/cmd_gama_headless_legacy_gen.sh .;
+    cp ${model_gaml} inputs/model.gaml;
+    cp -fr /opt/gama-platform software/.;
+    cp MY_gama-headless.sh software/gama-platform/headless/. ;
+    chmod -R 777 software;
+    /bin/bash cmd_gama_headless_legacy_gen.sh ${experiment_name} > outputs/GEN.txt;
+    xmlstarlet edit --inplace --update "//Simulation/@sourcePath" --value "model.gaml" outputs/file.xml;
+    cp outputs/file.xml ${file_xml};
+    ]]>
+  </command>
+
+  <inputs>
+
+    <param name="experiment_name" optional="false" type="text"
+           value="prey_predator"
+           label="experiment_name"
+           help="name of an experiment that must exist into gaml file as 'experiment' of type': 'gui'" />
+
+    <param name="model_gaml" optional="false" type="data" format="txt"
+           label="GAML model (.gaml format)"/>
+
+  </inputs>
+
+  <outputs>
+    <data format="xml" name="file_xml" label="XML file of experiment plan"/>
+  </outputs>
+
+  <tests>
+  </tests>
+
+  <help><![CDATA[
+
+Desc:
+
+-----
+
+gama_legacy_gen.xml tool, running a GAMA Headless in 'Legacy' mode, generates
+the XML file 'file_xml' corresponding with the experiment 'experiment_name'
+(of 'type': 'gui') contained into the GAML file 'model_gaml'.
+
+Inputs:
+
+  - experiment_name
+  - model_gaml
+
+Outputs:
+
+  - file_xml
+
+Credits:
+
+--------
+
+-  Author: Nathalie Rousse nathalie.rousse@inrae.fr
+-  Copyright: INRAE
+
+  ]]>
+  </help>
+
+</tool>
+