# HG changeset patch
# User siwaa
# Date 1733763538 0
# Node ID 470b8ed4ce1aae0411b729000e735c52d89e37df
# Parent  05a4aedfa923aeeb0ed73ad4e231f130681d088b
planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_HEADLESS_LEGACY/galaxy-tools/gama_legacy_gen commit f3324742c1aa0050df56ad3f868018360a10a6ab-dirty

diff -r 05a4aedfa923 -r 470b8ed4ce1a gama_legacy_gen.xml
--- a/gama_legacy_gen.xml	Mon Nov 18 13:58:30 2024 +0000
+++ b/gama_legacy_gen.xml	Mon Dec 09 16:58:58 2024 +0000
@@ -13,13 +13,9 @@
 
   <command detect_errors="aggressive">
     <![CDATA[
-    mkdir -p software; mkdir -p inputs; mkdir -p outputs;
-    cp $__tool_directory__/src/MY_gama-headless.sh .;
+    mkdir -p inputs; mkdir -p outputs;
     cp $__tool_directory__/src/cmd_gama_headless_legacy_gen.sh .;
     cp ${model_gaml} inputs/model.gaml;
-    cp -fr /opt/gama-platform software/.;
-    cp MY_gama-headless.sh software/gama-platform/headless/. ;
-    chmod -R 777 software;
     /bin/bash cmd_gama_headless_legacy_gen.sh ${experiment_name} > outputs/GEN.txt;
     xmlstarlet edit --inplace --update "//Simulation/@sourcePath" --value "model.gaml" outputs/file.xml;
     cp outputs/file.xml ${file_xml};
diff -r 05a4aedfa923 -r 470b8ed4ce1a src/cmd_gama_headless_legacy_gen.sh
--- a/src/cmd_gama_headless_legacy_gen.sh	Mon Nov 18 13:58:30 2024 +0000
+++ b/src/cmd_gama_headless_legacy_gen.sh	Mon Dec 09 16:58:58 2024 +0000
@@ -23,5 +23,5 @@
 #EXPERIMENT_NAME="prey_predator"
 
 HOME=$(echo $PWD)
-cd software/gama-platform/headless;
+cd /opt/gama-platform/headless;
 /bin/bash MY_gama-headless.sh -xml ${EXPERIMENT_NAME} ${HOME}/inputs/model.gaml ${HOME}/outputs/file.xml