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changeset 4:ad48b8d5acd4 draft

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planemo upload for repository https://forgemia.inra.fr/nathalie.rousse/use/-/tree/gama/GAMA_HEADLESS_LEGACY/galaxy-tools/gama_legacy_gen commit 983b35e3ac65be4a73d020fa801b906d8d750de3-dirty
author siwaa
date Mon, 09 Dec 2024 17:32:43 +0000
parents 4f6c9c14b8e4
children 07dcd2acad0b
files gama_legacy_gen.xml src/cmd_gama_headless_legacy_gen.sh
diffstat 2 files changed, 6 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/gama_legacy_gen.xml	Mon Dec 09 17:00:18 2024 +0000
+++ b/gama_legacy_gen.xml	Mon Dec 09 17:32:43 2024 +0000
@@ -5,7 +5,7 @@
   <requirements>
 
     <!-- singularity --> 
-    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/gama_headless:f3324742c1aa0050df56ad3f868018360a10a6ab</container>
+    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/gama_headless:983b35e3ac65be4a73d020fa801b906d8d750de3</container>
 
     <!-- image locale
     <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_gama/use/GAMA_HEADLESS_LEGACY/containers/gama_headless.simg</container -->
--- a/src/cmd_gama_headless_legacy_gen.sh	Mon Dec 09 17:00:18 2024 +0000
+++ b/src/cmd_gama_headless_legacy_gen.sh	Mon Dec 09 17:32:43 2024 +0000
@@ -23,5 +23,10 @@
 #EXPERIMENT_NAME="prey_predator"
 
 HOME=$(echo $PWD)
+
+# !!! Passage en variables d'environnement
+export MY_JAVA_DIR=${HOME}/_java
+export MY_TEMP_DIR=${HOME}
+
 cd /opt/gama-platform/headless;
 /bin/bash MY_gama-headless.sh -xml ${EXPERIMENT_NAME} ${HOME}/inputs/model.gaml ${HOME}/outputs/file.xml