--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/gama_legacy_run.xml	Fri Aug 02 18:03:16 2024 +0000
@@ -0,0 +1,87 @@
+<tool id="gama_legacy_run" name="gama_legacy_run" version="1.0.0">
+
+  <description>tool running an experiment plan XML file associated with a GAML file (GAMA Headless Legacy mode)</description>
+
+  <requirements>
+
+    <!-- singularity -->
+    <container type="singularity">oras://registry.forgemia.inra.fr/nathalie.rousse/use/gama_headless:e45168638437055475beeaa614611cb315a56fca</container>
+
+    <!-- image locale
+    <container type="singularity">/home/nrousse/workspace_git/SIWAA_regroup/USE_branch_gama/use/GAMA_HEADLESS_LEGACY/containers/gama_headless.simg</container -->
+  </requirements>
+
+  <command detect_errors="aggressive">
+    <![CDATA[
+    mkdir -p software; mkdir -p exp;
+    cp $__tool_directory__/src/MY_gama-headless.sh .;
+    cp $__tool_directory__/src/cmd_gama_headless_legacy_run.sh .;
+    cp ${model_gaml} exp/model.gaml;
+    cp ${file_xml} exp/file.xml;
+    xmlstarlet edit --inplace --update "//Simulation/@sourcePath" --value "model.gaml" exp/file.xml;
+    xmlstarlet edit --inplace --update "//Simulation/@finalStep" --value "${final_step}" exp/file.xml;
+    cp -fr /opt/gama-platform software/.;
+    cp MY_gama-headless.sh software/gama-platform/headless/. ;
+    chmod -R 777 software;
+    /bin/bash cmd_gama_headless_legacy_run.sh > exp/RUN.txt;
+    rm -fr exp/outputs/.workspace*;
+    zip -r tmp_result exp;
+    mv tmp_result.zip ${result_zip};
+    ]]>
+  </command>
+
+  <inputs>
+
+    <param name="file_xml" optional="false" type="data" format="xml"
+           label="XML file of experiment plan (.xml format)"/>
+
+    <param name="model_gaml" optional="false" type="data" format="txt"
+           label="GAML model (.gaml format)"/>
+
+    <param name="final_step" optional="true" type="integer"
+           value="1000" min="10" max="2000"
+           label="final_step"
+           help="'finalStep' attribute of 'experiment' tag [10, 2000]" />
+
+  </inputs>
+
+  <outputs>
+    <data format="zip" name="result_zip" label=".zip file of results folder"/>
+  </outputs>
+
+  <tests>
+  </tests>
+
+  <help><![CDATA[
+
+Desc:
+
+-----
+
+gama_legacy_run.xml tool, running a GAMA Headless in 'Legacy' mode, runs
+an experiment plan XML file 'file_xml' (such as XML file generated by
+gama_legacy_gen.xml tool) associated with its GAML file 'model_gaml',
+allowing some modifications of the plan : 'final_step' modification.
+
+Inputs:
+
+  - file_xml
+  - model_gaml
+  - final_step
+
+Outputs:
+
+  - result_zip
+
+Credits:
+
+--------
+
+-  Author: Nathalie Rousse nathalie.rousse@inrae.fr
+-  Copyright: INRAE
+
+  ]]>
+  </help>
+
+</tool>
+