Mercurial > repos > siwaa > insilicow

comparison test-data/input/ALIEN-demo/farmer-plan_ALIEN-demo.txt @ 3:3fe3e1e6a40b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit b530a8209615f225696abe3e0ba49093ff3dc4ad"
author siwaa
date Mon, 25 Aug 2025 16:37:43 +0000
parents
children
comparison
equal deleted inserted replaced
2:2722892ff716 3:3fe3e1e6a40b
1 #################################################################################################################
2 # #
3 # InSiliCow #
4 # Virtual farm specification #
5 # #
6 #################################################################################################################
7
8 #################################################################################################################
9 #====== GENERAL SETTINGS #
10 #################################################################################################################
11
12 #______ Include files
13 @include farmer-log.txt # providing log action and trigger
14 @include farmer-base.txt # providing basic components
15
16 #______ Models: specify models for individual cows
17 param_general{
18 garuns_type = garuns_olivier
19 rpm_type = rpm_lite
20 abortion_type = abortion_olivier
21 }
22
23 #______ Simulation: provide time range, output database and code name
24 init{
25 begin_date = $start_date$ 00:00:00
26 end_date = $stop_date$ 23:59:59
27 output_db = db_events.sqlite
28 output_config = config.txt
29 name = $sim_id$
30 }
31
32 #______ Log Farm information
33 link{
34 trigger = init
35 action = log_db farm_tag $farm_tag$
36 action = log_db start_date $start_date$
37 action = log_db stop_date $stop_date$
38 action = log_db now_date $now_date$
39 action = log_db latitude $latitude$
40 action = log_db longitude $longitude$
41 }
42
43 #______ End of simulation
44 trigger{
45 type = chron
46 name = tr_end_simu
47 scheme = $stop_date$ 23:59:58
48 }
49
50 #______ Past and future
51 condition{
52 type = chron_range
53 name = past
54 from = $start_date$ 00:00:00
55 to = $now_date$ 00:00:01
56 }
57
58 condition{
59 type = chron_range
60 name = future
61 from = $now_date$ 00:00:00
62 to = $stop_date$ 23:59:59
63 }
64
65 #______ Day one
66 trigger{
67 type = chron
68 name = day_one_herd
69 scheme = $start_date$ 23:59:59
70 }
71 trigger{
72 type = custom
73 name = day_one
74 }
75 link{
76 trigger = day_one_herd
77 action = broadcast_now day_one
78 }
79
80 #______ Calving tag
81 link{
82 trigger = calving
83 condition = calf_sex male
84 condition = future
85 action = log_db birth_of_male no_tag
86 }
87 link{
88 trigger = calving
89 condition = calf_sex female
90 condition = future
91 action = log_db birth_of_female no_tag
92 }
93
94 #______ Manage initial dam
95 state{
96 state = INITIAL-DAM
97 }
98
99 link{
100 trigger = day_one
101 action = state_add INITIAL-DAM
102 }
103 link{
104 trigger = parturition
105 condition = is_in INITIAL-DAM
106 condition = not is_in IN_WILD
107 action = trigger_later tr_delete_cow 1
108 }
109 trigger{
110 type = custom
111 name = tr_delete_cow
112 }
113 link{
114 trigger = tr_delete_cow
115 action = delete_cow remove_initial_dam
116 }
117
118 #______ Stoechio
119 stoechio{
120
121 }
122
123 #################################################################################################################
124 #====== FARMING #
125 #################################################################################################################
126
127 #______ Keep cows and calves in farm: no natural mating
128
129 link{
130 trigger = enter IN_WILD
131 action = state_move IN_WILD IN_FARM
132 }
133
134 link{
135 trigger = enter WILD_COW
136 action = state_move WILD_COW DRY_COW
137 }
138
139 #______ Remove calf from dam: no natural weaning
140
141 link{
142 trigger = enter SUCKLING_CALF
143 action = state_move SUCKLING_CALF NURSED_CALF
144 }
145
146 #______ Milk cows: no natural drying-off at calf weaning
147
148 link{
149 trigger = enter NURSING_COW
150 action = state_move NURSING_COW LACTATING_COW
151 }
152
153 #______ Optimal feeding
154
155 link{
156 trigger = enter IN_FARM
157 action = trigger_later tr_optimal_feeding 0
158 }
159 trigger{
160 type = custom
161 name = tr_optimal_feeding
162 }
163 link{
164 trigger = tr_optimal_feeding
165 action = change_food optimal
166 }
167
168
169 #################################################################################################################
170 #====== FARM COMPONENTS: genotype #
171 #################################################################################################################
172
173 #______ Genetic_sD: provide Mendelian sampling std dev for transmission of Genetic Scaling Parameters (GSP)
174 # GSP_newborn ~ Normal [ (GSP_mother + GSP_father)/2 , GSP_sd ] | within (min, max)
175
176 genetic_sd{
177 garuns_olivier.WM{
178 sd = 50
179 min = 200
180 max = 800
181 }
182
183 garuns_olivier.khi_M {
184 sd = 0.06
185 min = 0.1
186 max = 0.6
187 }
188
189 garuns_olivier.b0{
190 sd = 0
191 min = 0.80
192 max = 2.40
193 }
194
195 garuns_olivier.nu_X{
196 sd = 0
197 min = 0.2
198 max = 1.8
199 }
200
201 garuns_olivier.nu_Y{
202 sd = 0.1
203 min = 0.2
204 max = 1.8
205 }
206
207 garuns_olivier.nu_F{
208 sd = 0
209 min = 0.50
210 max = 1.50
211 }
212
213 garuns_olivier.nu_P{
214 sd = 0
215 min = 0.50
216 max = 1.50
217 }
218
219 garuns_olivier.eD_star{
220 sd = 0
221 min = 9.0
222 max = 15.0
223 }
224
225 garuns_olivier.NDF_star{
226 sd = 0
227 min = 0.10
228 max = 0.90
229 }
230
231 garuns_olivier.psi{
232 sd = 0
233 min = 0
234 max = 1
235 }
236
237 rpm_lite.nu_I{
238 sd = 0.007
239 min = 0.00
240 max = 0.20
241 }
242
243 rpm_lite.nu_B{
244 sd = 0.07
245 min = 1.20
246 max = 2.20
247 }
248
249 rpm_lite.nu_Z{
250 sd = 0.02
251 min = 0.90
252 max = 1.10
253 }
254 }
255
256 #################################################################################################################
257 #====== FARM COMPONENTS: herd (genotype-based initialization of individual cows) #
258 #################################################################################################################
259
260 #______ INITIALIZATION of ALIEN farm
261
262 #______ Initial dam
263 init_cow{
264 name=initial_dam
265
266 ### ABORTION rules according to days in pregnancy (dip)
267 abortion_olivier.delta = constant 3.0
268 abortion_olivier.enabled = never
269 abortion_olivier.dip = vector constant 17 ; constant 64
270 abortion_olivier.abo = vector constant 0.02 ; constant 0.005 ; constant 0.0004
271 garuns_olivier.WM = norm99 450 50 #450 ± 25
272 garuns_olivier.khi_M = norm99 0.30 0.03 # 0.33 ± 0.03
273 garuns_olivier.b0 = norm99 1.6 0 # 1.6 ± 0.16
274 garuns_olivier.nu_X = norm99 1 0 # 1.0 ± 0.10
275 garuns_olivier.nu_Y = norm99 1.1 0.1 # 1.0 ± 0.10
276 garuns_olivier.nu_F = norm99 1 0 # 1.0 ± 0.02
277 garuns_olivier.nu_P = norm99 1 0 # 1.0 ± 0.02
278 garuns_olivier.eD_star = norm99 10.7 0 # 10.7 ± 0.5
279 garuns_olivier.NDF_star = norm99 0.5 0 # 0.5 ± 0.02
280 garuns_olivier.psi = norm99 0.5 0
281 rpm_lite.nu_B = norm99 1.7 0.07 # 1.7 ± 0.07
282 rpm_lite.nu_Z = norm99 1 0.02 # 1.0 ± 0.02
283 rpm_lite.nu_I = norm99 0.025 0.007 # 0.026 ± 0.007
284 }
285
286 #______ Initial sire
287 init_bull{
288 name=semen_initial_sire
289 bull.breed_name = dairy
290 bull.semens_quality = constant 1.0
291 bull.female_ratio = constant 1.0
292 garuns_olivier.WM = norm99 450 50 #450 ± 25
293 garuns_olivier.khi_M = norm99 0.30 0.03 # 0.33 ± 0.03
294 garuns_olivier.b0 = norm99 1.6 0 # 1.6 ± 0.16
295 garuns_olivier.nu_X = norm99 1 0 # 1.0 ± 0.10
296 garuns_olivier.nu_Y = norm99 1.1 0.1 # 1.0 ± 0.10
297 garuns_olivier.nu_F = norm99 1 0 # 1.0 ± 0.02
298 garuns_olivier.nu_P = norm99 1 0 # 1.0 ± 0.02
299 garuns_olivier.eD_star = norm99 10.7 0 # 10.7 ± 0.5
300 garuns_olivier.NDF_star = norm99 0.5 0 # 0.5 ± 0.02
301 garuns_olivier.psi = norm99 0.5 0
302 rpm_lite.nu_B = norm99 1.7 0.07 # 1.7 ± 0.07
303 rpm_lite.nu_Z = norm99 1 0.02 # 1.0 ± 0.02
304 rpm_lite.nu_I = norm99 0.025 0.007 # 0.026 ± 0.007
305 }
306
307
308 #______ Generate dams of each individual cow to create
309
310 action{
311 type = buy_cow
312 name = buy_dam_of_id0001
313 init_cow = initial_dam
314 init_bull = semen_initial_sire
315 age = 600
316 days_after_conception = -1
317 number = 1
318 }
319
320 action{
321 type = buy_cow
322 name = buy_dam_of_id0002
323 init_cow = initial_dam
324 init_bull = semen_initial_sire
325 age = 600
326 days_after_conception = -30
327 number = 1
328 }
329
330 action{
331 type = buy_cow
332 name = buy_dam_of_id0003
333 init_cow = initial_dam
334 init_bull = semen_initial_sire
335 age = 600
336 days_after_conception = -600
337 number = 1
338 }
339
340 link{
341 trigger = init
342 action = buy_dam_of_id0001
343 action = buy_dam_of_id0002
344 action = buy_dam_of_id0003
345 }
346
347
348 #################################################################################################################
349 #====== FARM COMPONENTS: semen (genotype-based initialization of semen from individual bulls) #
350 #################################################################################################################
351
352 # Only the semen of individual bulls is generated and used for insemination
353
354 breed{
355 breed = dairy
356 breed = beef
357 }
358
359 init_bull{
360 name=semen_dairy_standard
361 bull.breed_name = dairy
362
363 ### QUALITY & SEX RATIO
364 bull.semens_quality = norm99 0.95 0.05 # a number between 0.0 (=never works) and 1.0 (=perfect)
365 bull.female_ratio = constant 0.5 # offspring sex ratio. 1.0 = 100%female, 0.0=0%female
366
367 ### GARUNS & RPM_lite Genetic Scaling Parameters
368 # Genotype sub-block (see genotype_generic.txt)
369
370 garuns_olivier.WM = constant 450 #450
371 garuns_olivier.khi_M = constant 0.30 # 0.33
372 garuns_olivier.b0 = constant 1.6 # 1.6
373 garuns_olivier.nu_X = constant 1 # 1.0
374 garuns_olivier.nu_Y = constant 1.1 # 1.0
375 garuns_olivier.nu_F = constant 1 # 1.0
376 garuns_olivier.nu_P = constant 1 # 1.0
377 garuns_olivier.eD_star = constant 10.7 # 10.7
378 garuns_olivier.NDF_star = constant 0.5 # 0.5
379 garuns_olivier.psi = constant 0.5
380 rpm_lite.nu_B = constant 1.7 # 1.7
381 rpm_lite.nu_Z = constant 1 # 1.0
382 rpm_lite.nu_I = constant 0.025 # 0.026
383 }
384
385
386
387 #################################################################################################################
388 #====== FARM COMPONENTS: heat detection #
389 #################################################################################################################
390
391 #______ Estrous detection method
392 estrous_detection_method{
393 name=estrous_detection_default
394
395 #When do we observe oestruses
396 time_slice = 06:00:00 18:00:00 #00:00:01 23:59:59
397
398 #estrogene is transformed to an expression using a Hill function
399 expression_threshold=0.75 #default 0.75
400 expression_stiffness=7 #default 7
401
402 #the oestrus worth an insemination if the memory function is above this threshold
403 #THIS threshold is scaled for an observation all the day long
404 #if you observe half a day multiply this threshold by 0.5
405 #1.0 is a reasonable base value for all day observations
406 detection_threshold=0.05 # 0.1
407
408 #then, the oestrus is truely detected with a chance of
409 sensitivity = 0.75 #0.7
410
411 #then an average of wrong_oestrus_per_day are generated
412 wrong_oestrus_per_day = 0 #0.00
413 }
414
415 #################################################################################################################
416 #====== FARM COMPONENTS: feedstuffs #
417 #################################################################################################################
418
419
420 #################################################################################################################
421 #====== FARM COMPONENTS: diets #
422 #################################################################################################################
423
424 feed{
425 name = calf_diet
426 type = mix
427
428 feed = CPL.MLK
429 proportion = 1.00
430 }
431
432 feed{
433 name = heifer_diet
434 type = mix
435
436 feed = FO.STR
437 proportion = 0.02
438 feed = FO.HAP
439 proportion = 0.60
440 feed = FO.GSI
441 proportion = 0.32
442 feed = CO.CER
443 proportion = 0.05
444 feed = CPL.CMV
445 proportion = 0.01
446 }
447
448 feed{
449 name = lactation_diet
450 type = mix
451
452 feed = FO.STR
453 proportion = 0.01
454 feed = FO.HAP
455 proportion = 0.03
456 feed = FO.GSI
457 proportion = 0.04
458 feed = FO.CSI
459 proportion = 0.70
460 feed = CO.CER
461 proportion = 0.05
462 feed = CO.OSC
463 proportion = 0.13
464 feed = CO.ROO
465 proportion = 0.03
466 feed = CPL.CMV
467 proportion = 0.01
468 }
469
470 feed{
471 name = drycow_diet
472 type = mix
473
474 feed = FO.STR
475 proportion = 0.02
476 feed = FO.HAP
477 proportion = 0.68
478 feed = FO.CSI
479 proportion = 0.08
480 feed = CO.CER
481 proportion = 0.05
482 feed = CO.OSC
483 proportion = 0.13
484 feed = CO.ROO
485 proportion = 0.03
486 feed = CPL.CMV
487 proportion = 0.01
488 }
489
490 feed{
491 name = pasture_diet
492 type = mix
493
494 feed = FO.FGX
495 proportion = 0.778
496 feed = CO.CER
497 proportion = 0.050
498 feed = CO.OSC
499 proportion = 0.130
500 feed = CO.TUB
501 proportion = 0.002
502 feed = CO.ROO
503 proportion = 0.030
504 feed = CPL.CMV
505 proportion = 0.010
506 }
507
508
509
510
511 #################################################################################################################
512 #====== FARM COMPONENTS: time schemes #
513 #################################################################################################################
514
515
516
517 #_______Breeding season: every year from *-03-21 00:00:00 to *-06-21 23:59:59
518
519 condition{
520 type = chron_range
521 name = breeding_season
522 from = *-03-21 00:00:00 #date_breeding_start
523 to = *-06-21 23:59:59 #date_breeding_stop
524 }
525
526 trigger{
527 type = chron
528 name = breeding_start
529 scheme = *-03-21 00:00:00 #date_breeding_start
530 }
531
532 trigger{
533 type = chron
534 name = breeding_stop
535 scheme = *-06-21 23:59:59 #date_breeding_stop
536 }
537
538 #_______Outdoor date
539
540 trigger{
541 type = chron
542 name = outdoor_herd
543 scheme = *-04-01 00:00:00
544 }
545 trigger{
546 type = custom
547 name = outdoor
548 }
549 link{
550 trigger = outdoor_herd
551 action = broadcast_now outdoor
552 }
553
554 #_______Indoor date
555
556 trigger{
557 type = chron
558 name = indoor_herd
559 scheme = *-10-01 00:00:00
560 }
561 trigger{
562 type = custom
563 name = indoor
564 }
565 link{
566 trigger = indoor_herd
567 action = broadcast_now indoor
568 }
569
570
571
572
573 #################################################################################################################
574 #====== FARM COMPONENTS: groups #
575 #################################################################################################################
576
577 state{
578 state = REARED_CALF
579 state = WEANED_HEIFER
580 state = UNEXPECTED_PREGNANT
581 state = INSEMINATED
582 state = EXPECTED_PREGNANT
583 state = EXPECTED_TO_CALVE
584 state = CALVED
585 state = TO_BREED
586 state = TO_CULL
587 }
588
589 action{
590 type = genericlog
591 name = log_states_user
592
593 log_type = sqlite
594 sqlite_path = db_states.sqlite
595 sqlite_table = user_states
596
597 #log_type = file
598 #file_path = states-user.txt
599 #sep_col = \t
600 #file_line_flush=no
601
602
603 #--- from cow and simulator ---
604 column{
605 value = time
606 name = time
607 sqlite_type = numeric
608 }
609
610 column{
611 value = state.count.REARED_CALF
612 name = REARED_CALF
613 sqlite_type = numeric
614 }
615
616 column{
617 value = state.count.WEANED_HEIFER
618 name = WEANED_HEIFER
619 sqlite_type = numeric
620 }
621
622 column{
623 value = state.count.UNEXPECTED_PREGNANT
624 name = UNEXPECTED_PREGNANT
625 sqlite_type = numeric
626 }
627
628 column{
629 value = state.count.INSEMINATED
630 name = INSEMINATED
631 sqlite_type = numeric
632 }
633
634 column{
635 value = state.count.EXPECTED_PREGNANT
636 name = EXPECTED_PREGNANT
637 sqlite_type = numeric
638 }
639
640 column{
641 value = state.count.EXPECTED_TO_CALVE
642 name = EXPECTED_TO_CALVE
643 sqlite_type = numeric
644 }
645
646 column{
647 value = state.count.CALVED
648 name = CALVED
649 sqlite_type = numeric
650 }
651
652 column{
653 value = state.count.TO_BREED
654 name = TO_BREED
655 sqlite_type = numeric
656 }
657
658 column{
659 value = state.count.TO_CULL
660 name = TO_CULL
661 sqlite_type = numeric
662 }
663
664 }
665
666 link{
667 trigger = every_day_herd
668 action = log_states_user
669 }
670
671 #################################################################################################################
672 #====== FARM COMPONENTS: operations #
673 #################################################################################################################
674
675
676 #______ Rear calves at 6 d
677
678 trigger{
679 type = custom
680 name = tr_rear_calf
681 }
682
683 link{
684 trigger = enter NURSED_CALF
685 action = trigger_later tr_rear_calf 6
686 }
687
688 link{
689 trigger = tr_rear_calf
690 action = state_add REARED_CALF
691 }
692
693 #______ Sell calves according to calf pen capacity
694
695 link{
696 trigger = every_day
697 condition = state_size REARED_CALF > 25 #calf_pen_capacity
698 action = sell_calves
699 }
700
701 trigger{
702 type = custom
703 name = tr_sell_calves
704 }
705
706 action{
707 type = broadcast_now
708 name = sell_calves
709 condition = is_in REARED_CALF
710 sortby = age
711 reverse = no
712 limit = 1
713 trigger = tr_sell_calves
714 }
715
716 link{
717 trigger = tr_sell_calves
718 action = state_delete REARED_CALF
719 action = delete_cow sale of calves
720 }
721
722 #______ Wean calves at 100 days
723
724 link{
725 trigger = every_day
726 condition = age >= 100
727 action = state_move REARED_CALF WEANED_HEIFER
728 }
729
730 #______ Open breeding
731 link{
732 trigger = every_day
733 condition = age > 450 #breeding_age
734 condition = breeding_season
735 action = state_move WEANED_HEIFER UNEXPECTED_PREGNANT
736 action = state_move TO_BREED UNEXPECTED_PREGNANT
737 action = state_move EXPECTED_TO_CALVE UNEXPECTED_PREGNANT
738 }
739
740 #______ Start estrous detection
741
742 link{
743 trigger = enter UNEXPECTED_PREGNANT
744 action = estrous_start estrous_detection_default
745 }
746
747 #______ Detect estrous
748
749 link{
750 trigger = estrous
751 condition = is_in IN_FARM
752 action = state_move EXPECTED_PREGNANT UNEXPECTED_PREGNANT
753 }
754
755 #______ Inseminate once a day when estrous is detected
756
757 trigger{
758 type = custom
759 name = tr_move_to_EXPECTED_PREGNANT
760 }
761
762 link{
763 trigger = tr_move_to_EXPECTED_PREGNANT
764 action = state_move INSEMINATED EXPECTED_PREGNANT
765 }
766
767 link{
768 trigger = estrous
769 condition = is_in IN_FARM
770 condition = future
771 condition = is_in UNEXPECTED_PREGNANT
772 action = state_move UNEXPECTED_PREGNANT INSEMINATED
773 action = trigger_later tr_move_to_EXPECTED_PREGNANT 1
774 action = log_db 01_INSEMINATION
775 action = inseminate semen_dairy_standard
776 }
777
778 #______ Close breeding
779 link{
780 trigger = every_day
781 condition = is_in IN_FARM
782 condition = not breeding_season
783 action = state_move EXPECTED_PREGNANT EXPECTED_TO_CALVE
784 action = state_move INSEMINATED EXPECTED_TO_CALVE
785 action = estrous_stop
786 }
787
788 link{
789 trigger = every_day
790 condition = is_in IN_FARM
791 condition = is_in UNEXPECTED_PREGNANT
792 condition = not breeding_season
793 action = state_move UNEXPECTED_PREGNANT TO_CULL
794 action = log_db delete_cow: unexpected pregnant at the end of breeding season
795 action = estrous_stop
796 }
797
798
799
800
801
802
803
804 #_______ Postpartum management
805
806 trigger{
807 type = custom
808 name = tr_postpartum
809 }
810
811 link{
812 trigger = parturition
813 action = state_move EXPECTED_TO_CALVE CALVED
814 action = trigger_later tr_postpartum 40 # VWP
815 }
816
817 link{
818 trigger = tr_postpartum
819 action = state_move CALVED TO_BREED
820 }
821
822 #_______ Late abortion management
823
824 #Abortions after 210 days in pregnancy are managed by culling
825 link{
826 trigger = abortion
827 condition = days_after_conception > 210
828 #action = log_db TO_CULL_from_PREGNANT_after_late_fetal_death
829 action = log_db delete_cow: after fetal death > 210 days
830 action = state_move EXPECTED_PREGNANT TO_CULL
831 action = state_move EXPECTED_TO_CALVE TO_CULL
832 }
833
834 #_______ Drying-off after 305 days in milk if cow is expected to calve
835
836 link{
837 trigger = every_day
838 condition = is_in IN_FARM
839 condition = is_milking
840 condition = is_in EXPECTED_TO_CALVE
841 condition = days_after_calving >= 305
842 action = stop_milking
843 action = log_db stop_milking: pregnant & days_after_calving >= 305 days
844
845 }
846
847 #_______ Drying-off if milk yield < 5 kg/d
848
849 link{
850 trigger = every_day
851 condition = is_in IN_FARM
852 condition = is_milking
853 condition = milk_yield < 5
854 action = stop_milking
855 action = log_db stop_milking: milk_yield < 5 kg/d
856
857 }
858
859 #_______ Remove non-milking cows to cull
860
861 link{
862 trigger = every_week
863 condition = is_in TO_CULL
864 condition = not is_milking
865 ## #condition = not is_pregnant
866 #action = log_db Remove_ojm
867 action = delete_cow every week
868 }
869
870 #_______ Individual pregnancy diagnosis 28 days after insemination
871
872 trigger{
873 type = custom
874 name = tr_cow_pregnancy_diagnosis
875 }
876
877 link{
878 trigger = insemination
879 condition = is_in IN_FARM
880 action = trigger_later tr_cow_pregnancy_diagnosis 28
881 }
882
883 link{
884 trigger = tr_cow_pregnancy_diagnosis
885 condition = is_in IN_FARM
886 condition = is_in EXPECTED_PREGNANT
887 condition = not is_pregnant
888 action = state_move EXPECTED_PREGNANT UNEXPECTED_PREGNANT
889 }
890
891 link{
892 trigger = tr_cow_pregnancy_diagnosis
893 condition = is_in IN_FARM
894 condition = is_in EXPECTED_TO_CALVE
895 condition = not is_pregnant
896 action = state_move EXPECTED_TO_CALVE TO_CULL
897 action = log_db delete_cow: Negative cow pregnancy diagnosis
898 }
899
900
901 #_______ Herd pregnancy diagnosis 45 days after end of breeding season
902
903 trigger{
904 type = custom
905 name = tr_herd_pregnancy_diagnosis
906 }
907
908 link{
909 trigger = breeding_stop
910 action = trigger_later tr_herd_pregnancy_diagnosis 45
911 }
912
913 link{
914 trigger = tr_herd_pregnancy_diagnosis
915 # action = log_db Herd_pregnancy_diagnosis
916 action = broadcast_now tr_cow_pregnancy_diagnosis
917 }
918
919 #______ Culling rules during breeding season: Cull unexpected pregnant nulliparous at age > 800 days
920
921 link{
922 trigger = enter UNEXPECTED_PREGNANT
923 condition = parity = 0
924 condition = age > 800 #nulliparous_max_breeding_age
925 #action = log_db TO_CULL_from_CYCLING_because_too_old_heifer
926 action = state_move UNEXPECTED_PREGNANT TO_CULL
927 action = log_db delete_cow: heifer of age > 800 days
928 }
929
930 #______ Culling rules during breeding season: Cull unexpected pregnant 320 days_after_calving
931 link{
932 trigger = enter UNEXPECTED_PREGNANT
933 condition = days_after_calving > 320
934 #action = log_db TO_CULL_from_CYCLING_because_too_late_after_calving
935 action = log_db delete_cow: days after calving > 320 days
936 action = state_move UNEXPECTED_PREGNANT TO_CULL
937 }
938
939 #______ Culling rules during breeding season: Cull unexpected pregnant after 5 inseminations
940 link{
941 trigger = enter UNEXPECTED_PREGNANT
942 condition = parity > 0
943 condition = num_insemination_lactation >= 5
944 #action = log_db TO_CULL_from_BREEDING_max_nb_ins
945 action = log_db delete_cow: nb of insemination >= 5
946 action = state_move UNEXPECTED_PREGNANT TO_CULL
947 }
948
949 #______ Stop estrous detection of cows to cull
950
951 link{
952 trigger = enter TO_CULL
953 action = estrous_stop
954 }
955
956
957 #______ Feeding plan according to groups # > at rearing: on calf diet
958 link{
959 trigger = enter REARED_CALF
960 action = change_food calf_diet
961 }
962
963 # > at weaning: on heifer diet
964 link{
965 trigger = enter WEANED_HEIFER
966 action = change_food heifer_diet
967 }
968
969 # > at parturition: on lactation diet
970 link{
971 trigger = parturition
972 action = change_food lactation_diet
973 }
974
975 # > at drying-off: on drycow_diet
976 link{
977 trigger = stop_milking
978 action = change_food drycow_diet
979 }
980
981 # > OUTDOOR: on pasture diet
982 link{
983 trigger = outdoor
984 condition = not is_in REARED_CALF
985 action = change_food pasture_diet
986 }
987
988 # > INDOOR: back to diet according to state
989
990 link{
991 trigger = indoor
992 condition = is_in WEANED_HEIFER
993 action = change_food heifer_diet
994 }
995
996 link{
997 trigger = indoor
998 condition = not is_milking
999 action = change_food drycow_diet
1000 }
1001
1002 link{
1003 trigger = indoor
1004 condition = is_milking
1005 action = change_food lactation_diet
1006 }
1007
1008
1009 #______ Veal production / use semen from meat breed if expected pregnant > calf_pen_capacity
1010
1011 #______ Detect high producing cows > use high-grade semen > rear preferentially high-grade calves (=Renewal)
1012
1013 #______ Use extended lactation
1014
1015 #______ Cull oldest cow
1016
1017
1018 #################################################################################################################
1019 #====== FARM COMPONENTS: transfers #
1020 #################################################################################################################
1021
1022
1023 #################################################################################################################
1024 #====== FARM COMPONENTS: perturbations #
1025 #################################################################################################################
1026
1027
1028 #################################################################################################################
1029 #====== FARM COMPONENTS: parcels #
1030 #################################################################################################################
1031
1032