Mercurial > repos > siwaa > insilicow
comparison inSiliCow-post.sh @ 0:50112d3941d8 draft
"planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit a01dd8fc54d5015e703722d7acb8db4b54b4a468"
| author | siwaa |
|---|---|
| date | Mon, 07 Apr 2025 15:18:25 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:50112d3941d8 |
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| 1 #!/bin/sh | |
| 2 | |
| 3 echo "IN_EXPLAN=$IN_EXPLAN" # | |
| 4 echo "OUT_FOLDER=$OUT_FOLDER" # | |
| 5 echo "IN_FOLDER=$IN_FOLDER" # | |
| 6 echo "IN_EXE=$IN_EXE" # | |
| 7 echo "SCRIPT_FOLDER=$SCRIPT_FOLDER" # | |
| 8 echo "OUT_FOLDER=$OUT_FOLDER" # | |
| 9 echo "IN_SCILAB=$IN_SCILAB" # | |
| 10 echo "OUT_SIM=$OUT_SIM" # | |
| 11 echo "SIM_ID=$SIM_ID" # | |
| 12 | |
| 13 HERE=$(realpath ./ ) | |
| 14 | |
| 15 echo "$OUT_SIM BEGIN" &&\ | |
| 16 cp "$IN_FOLDER/farmer-log.txt" "$OUT_SIM" && \ | |
| 17 cd "$OUT_SIM" && \ | |
| 18 "$IN_EXE" farmer.txt > log.txt && \ | |
| 19 mkdir cows && \ | |
| 20 Rscript "$SCRIPT_FOLDER/cowcut.R" "./" "cows/" && \ | |
| 21 MESA_GL_VERSION_OVERRIDE=3.0 "$IN_SCILAB" -f "$SCRIPT_FOLDER/inSiliCow-abby.sci" -nwni -quit -args "$OUT_SIM" "$OUT_SIM" "$PL_PREFIX$SIM_ID$PL_SUFFIX" && \ | |
| 22 echo "$OUT_SIM OK" | |
| 23 | |
| 24 #--- ZIP individual sim forlers --- | |
| 25 #cd "$OUT_FOLDER" && \ | |
| 26 #zip -rmq9 "$SIM_ID.zip" "$SIM_ID" ; | |
| 27 #cd "$HERE"; | |
| 28 | |
| 29 |