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comparison insilicow.xml @ 6:5f2656b0bb25 draft default tip

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"planemo upload for repository https://forgemia.inra.fr/insilicow/insilicow-tool commit 95b5d6cc2a397fcf1be8cff787f86540d5efd360"
author siwaa
date Thu, 29 Jan 2026 07:59:18 +0000
parents 7bf632fdc738
children
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5:7bf632fdc738 6:5f2656b0bb25
1 <tool id="inSiliCow" name="inSiliCow" version="1.0.4"> 1 <tool id="inSiliCow" name="inSiliCow" version="1.0.5">
2 <description>to run the inSiliCow simulator</description> 2 <description>to run the inSiliCow simulator</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forge.inrae.fr/insilicow/insilicow-container:a773b01f824979b9f8fef89e89dbda0d7ef04ecb</container> 4 <container type="singularity">docker://registry.forge.inrae.fr/insilicow/insilicow-container:a773b01f824979b9f8fef89e89dbda0d7ef04ecb</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
10 echo "=================" && 10 echo "=================" &&
11 cp -r /insilicow-simulator . && 11 cp -r /insilicow-simulator . &&
12 cd insilicow-simulator/scripts && 12 cd insilicow-simulator/scripts &&
13 unzip -d tmp ${in} && 13 unzip -d tmp ${in} &&
14 configDir=\$(ls -1 tmp) && 14 configDir=\$(ls -1 tmp) &&
15 find examples/* -type d | xargs rm -R && 15 find examples/* -type d -maxdepth 0 | xargs rm -R &&
16 mv -f tmp/* examples && 16 mv -f tmp/* examples &&
17 pwd && ls && echo \$configDir && 17 pwd && ls && echo \$configDir &&
18 head -n -3 ./inSiliCow-run.sh > tmpFile && 18 head -n -3 ./inSiliCow-run.sh > tmpFile &&
19 mv tmpFile ./inSiliCow-run.sh && 19 mv tmpFile ./inSiliCow-run.sh &&
20 chmod u+x ./inSiliCow-run.sh && 20 chmod u+x ./inSiliCow-run.sh &&