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comparison parallelSticsRRotation-10.0.xml @ 0:e8b0d1d0797d draft default tip

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"planemo upload for repository https://forgemia.inra.fr/quaysofthestics/sticsquays/-/tree/master/tools commit 34d462246915d2d24868042deeda35a01985d2aa"
author siwaa
date Tue, 21 Feb 2023 19:03:38 +0000
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-1:000000000000 0:e8b0d1d0797d
1 <tool id="parallelSticsRRotation-10.0.0" name="parallelsticsrrotation-10.0.0" version="1.0.0">
2 <description>to run rotation paralelly [Stics-10.0.0]</description>
3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/quaysofthestics/sticsquays/rstudio_stics:10.0.0</container>
5 </requirements>
6 <command detect_errors="aggressive">
7 <![CDATA[
8 cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . &&
9 unzip ${WorkSpace} -d TMP &&
10 mkdir WS &&
11 mv TMP/* WS/txt_files &&
12 cp ${RotationPlan} WS/rotationPlan.xlsx &&
13 mkdir config &&
14 Rscript --verbose $__tool_directory__/parallelSticsRRotation.R &&
15 zip -r WS WS &&
16 cp WS.zip ${SimulatedWorkspace} &&
17 cp results.RData ${SimulationResults}
18 ]]>
19 </command>
20 <inputs>
21 <param name="WorkSpace" type="data" format="zip" label="Select a stics Workspace(zip file)"/>
22 <param name="RotationPlan" type="data" format="xlsx" label="Select a plan (xlsx)"/>
23 </inputs>
24 <outputs>
25 <data format="zip" name="SimulatedWorkspace"
26 label="Stics simulated Workspace">
27 </data>
28 <data format="rdata" name="SimulationResults"
29 label="Stics simulations results">
30 </data>
31 </outputs>
32 <tests>
33 </tests>
34 <help>
35 *The usage of this tool is restricted to the user of the stics_authorized group.*
36
37 *To be granted, apply to the Project Stics Team and then request to SIWAA*
38
39 Documentation
40 -------------
41 A tool to simulate stics rotation paralelly
42
43 Credits
44 -------
45 - Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
46 - Stics Site: https://www6.paca.inra.fr/stics_eng
47 - Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
48 - Copyright: INRAE
49 </help>
50 </tool>