Mercurial > repos > siwaa > redelac_stics_g

comparison redelacSticsInputGenerator.bash @ 15:413cec4dfe5f draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit e5eb5cacd8c91c5a5a8fa571e31b54d30e988733"
author siwaa
date Sat, 20 Jan 2024 09:42:29 +0000
parents 812bb8097dac
children 4d0807472ad3
comparison
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14:812bb8097dac 15:413cec4dfe5f
15 cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv && 15 cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
16 cp $8 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv && 16 cp $8 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
17 cp $9 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv && 17 cp $9 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
18 cp ${10} JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv && 18 cp ${10} JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
19 cd JavaSTICS-1.5.1-STICS-10.0.0 && 19 cd JavaSTICS-1.5.1-STICS-10.0.0 &&
20 (if [[ "$11" != "noAdditionalPlantOrConfig" ]] 20 (if [ "${11}" != "noAdditionalPlantOrConfig" ];
21 then 21 then
22 echo "coucou"
22 unzip -q -o ${11} 23 unzip -q -o ${11}
23 fi) && 24 fi) &&
24 /usr/bin/time -p -o ./bashlog Rscript --verbose $4/redelacSticsInputGenerator.R $1 $2 $3 && 25 /usr/bin/time -p -o ./bashlog Rscript --verbose $4/redelacSticsInputGenerator.R $1 $2 $3 &&
25 echo "Step 1, time to run the R script:" && 26 echo "Step 1, time to run the R script:" &&
26 echo "=================================" && 27 echo "=================================" &&