Mercurial > repos > siwaa > redelac_stics_g

comparison redelacSticsInputGenerator.bash @ 17:4d0807472ad3 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/redelac commit 9c5802d9b947f1e59bd5df610ebe5dfc89745be6"
author siwaa
date Tue, 23 Jan 2024 18:51:34 +0000
parents 413cec4dfe5f
children
comparison
equal deleted inserted replaced
16:f2fe11a20371 17:4d0807472ad3
25 /usr/bin/time -p -o ./bashlog Rscript --verbose $4/redelacSticsInputGenerator.R $1 $2 $3 && 25 /usr/bin/time -p -o ./bashlog Rscript --verbose $4/redelacSticsInputGenerator.R $1 $2 $3 &&
26 echo "Step 1, time to run the R script:" && 26 echo "Step 1, time to run the R script:" &&
27 echo "=================================" && 27 echo "=================================" &&
28 cat ./bashlog && 28 cat ./bashlog &&
29 echo "=================================" && 29 echo "=================================" &&
30 rm WS/1* && 30 (cd WS && ls | grep -e '^[0-9]*\.[0-9]*$' | xargs -i rm {}) &&
31 mv WS $WSname && 31 mv WS $WSname &&
32 /usr/bin/time -p -o ./bashlog zip ${13} -q -r $WSname $WSname && 32 /usr/bin/time -p -o ./bashlog zip ${13} -y -q -r $WSname $WSname &&
33 echo "Step 2, time to zip the Workspace:" && 33 echo "Step 2, time to zip the Workspace:" &&
34 echo "==================================" && 34 echo "==================================" &&
35 cat ./bashlog && 35 cat ./bashlog &&
36 echo "==================================" && 36 echo "==================================" &&
37 cp $WSname.zip ${12} 37 cp $WSname.zip ${12}