Mercurial > repos > siwaa > redelac_stics_g

comparison redelacSticsInputGenerator.bash @ 14:812bb8097dac draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit d16b9ecdb4dd51b69a6aaa4ab298b82455fe0267"
author siwaa
date Tue, 12 Dec 2023 10:38:20 +0000
parents 3db1f57029a7
children 413cec4dfe5f
comparison
equal deleted inserted replaced
13:3db1f57029a7 14:812bb8097dac
15 cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv && 15 cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
16 cp $8 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv && 16 cp $8 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
17 cp $9 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv && 17 cp $9 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
18 cp ${10} JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv && 18 cp ${10} JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
19 cd JavaSTICS-1.5.1-STICS-10.0.0 && 19 cd JavaSTICS-1.5.1-STICS-10.0.0 &&
20 if [[ "$11" != "noAdditionalPlantOrConfig" ]] 20 (if [[ "$11" != "noAdditionalPlantOrConfig" ]]
21 then 21 then
22 unzip -o ${10} 22 unzip -q -o ${11}
23 fi 23 fi) &&
24 /usr/bin/time -p -o ./bashlog Rscript --verbose $4/redelacSticsInputGenerator.R $1 $2 $3 && 24 /usr/bin/time -p -o ./bashlog Rscript --verbose $4/redelacSticsInputGenerator.R $1 $2 $3 &&
25 echo "Step 1, time to run the R script:" && 25 echo "Step 1, time to run the R script:" &&
26 echo "=================================" && 26 echo "=================================" &&
27 cat ./bashlog && 27 cat ./bashlog &&
28 echo "=================================" && 28 echo "=================================" &&