Mercurial > repos > siwaa > redelac_stics_g

comparison redelacSticsInputGenerator.xml @ 3:e344100f3354 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/redelac commit ff64e62033c2485113100d60c38be73e59ef119c"
author siwaa
date Thu, 29 Jun 2023 10:50:58 +0000
parents c7d424481b03
children af7d9ca55205
comparison
equal deleted inserted replaced
2:c60c25773642 3:e344100f3354
1 <tool id="redelacSticsInputGenerator" name="redelacSticsInputGenerator" version="1.0.0"> 1 <tool id="redelacSticsInputGenerator" name="redelacSticsInputGenerator" version="1.0.1">
2 <description>to run generate Stics Inputs for REDELAC</description> 2 <description>to run generate Stics Inputs for REDELAC</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/quaysofthestics/sticsquays/rstudio_stics:10.0.0</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/quaysofthestics/sticsquays/rstudio_stics_test:10.0.0</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 <![CDATA[ 7 <![CDATA[
8 cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . && 8 cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . &&
9 rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config && 9 rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config &&
10 cp -r $__tool_directory__/config JavaSTICS-1.5.1-STICS-10.0.0 && 10 cp -r $__tool_directory__/config JavaSTICS-1.5.1-STICS-10.0.0 &&
11 unzip ${Workspace} -d TMP && 11 unzip ${Workspace} -d TMP &&
12 export WSname=\$(ls TMP) && 12 export WSname=\$(ls TMP) &&
13 mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS && 13 mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
14 cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_gen.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
15 cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_newform.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
14 unzip ${Climat} -d TMPbis && 16 unzip ${Climat} -d TMPbis &&
15 mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS && 17 mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
16 cp ${USMs} JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv && 18 cp ${USMs} JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
17 cp ${Tec} JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv && 19 cp ${Tec} JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
18 cp ${Ini} JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv && 20 cp ${Ini} JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&