--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/redelacSticsInputGenerator.xml	Wed Jun 07 06:08:27 2023 +0000
@@ -0,0 +1,59 @@
+<tool id="redelacSticsInputGenerator" name="redelacSticsInputGenerator" version="1.0.0">
+  <description>to run generate Stics Inputs for REDELAC</description>
+  <requirements>
+    <container type="singularity">docker://registry.forgemia.inra.fr/quaysofthestics/sticsquays/rstudio_stics:10.0.0</container>
+  </requirements>
+  <command detect_errors="aggressive">
+    <![CDATA[ 
+	     cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . &&
+	     rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config &&
+             cp -r $__tool_directory__/config JavaSTICS-1.5.1-STICS-10.0.0 &&
+	     unzip ${Workspace} -d TMP &&
+             export WSname=\$(ls TMP) &&
+	     mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
+	     unzip ${Climat} -d TMPbis &&
+             mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
+	     cp ${USMs} JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
+	     cp ${Tec} JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
+	     cp ${Ini} JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
+	     cp ${Station} JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
+	     cd JavaSTICS-1.5.1-STICS-10.0.0 &&
+	     Rscript --verbose $__tool_directory__/redelacSticsInputGenerator.R &&
+             rm WS/1* &&
+             mv WS \$WSname &&
+	     zip -r \$WSname \$WSname &&
+	     cp \$WSname.zip ${GeneratedWorkspace}
+     ]]>
+  </command>
+  <inputs>
+    <param name="Workspace" type="data" format="zip" label="Select a stics Workspace (zip file)"/>
+    <param name="Climat" type="data" format="zip" label="Select a climat scenario (zip file)"/>    
+    <param name="USMs" type="data" format="csv" label="Select the USMs sheet (csv)"/>
+    <param name="Tec" type="data" format="csv" label="Select the Tec sheet (csv)"/>
+    <param name="Ini" type="data" format="csv" label="Select the Ini sheet (csv)"/>
+    <param name="Station" type="data" format="csv" label="Select the Station sheet (csv)"/>
+  </inputs>
+  <outputs>
+    <data format="zip" name="GeneratedWorkspace"
+          label="Stics generated  Workspace">
+    </data>
+  </outputs>
+  <tests>
+  </tests>
+  <help>
+*The usage of this tool is restricted to the user of the stics_authorized group.*
+
+*To be granted, apply to the Project Stics Team and then request to SIWAA*
+
+Documentation
+-------------
+A tool to generate Stics Inputs according to a plan for REDELAC
+
+Credits
+-------
+-  Wrapped Tool Author: https://www6.paca.inrae.fr/stics_eng/About-us/Project-Stics-Team
+-  Stics Site: https://www6.paca.inra.fr/stics_eng
+-  Galaxy Tool Maintainer: Patrick Chabrier patrick.chabrier@inrae.fr
+-  Copyright: INRAE
+  </help>
+</tool>