Mercurial > repos > siwaa > redelac_stics_g
diff redelacSticsInputGenerator.xml @ 10:f707c2fb725b draft
"planemo upload for repository https://forgemia.inra.fr/redelac commit af2d1fcb63a2ae897e02f11e82cc76c4f6e8ca5e"
author | siwaa |
---|---|
date | Mon, 02 Oct 2023 13:49:57 +0000 |
parents | 2a6d7d053ba7 |
children | 423950cd59cb |
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--- a/redelacSticsInputGenerator.xml Mon Sep 25 16:25:51 2023 +0000 +++ b/redelacSticsInputGenerator.xml Mon Oct 02 13:49:57 2023 +0000 @@ -1,16 +1,21 @@ -<tool id="redelacSticsInputGenerator" name="redelacSticsInputGenerator" version="1.0.4"> +<tool id="redelacSticsInputGenerator" name="redelacSticsInputGenerator" version="1.0.5"> <description>to run generate Stics Inputs for REDELAC</description> <requirements> - <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrpacks:b782e0b7ce3af7e7a14a87ea750145ed1c2595a0</container> + <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrpacks:69b14ab2616cfea4afc36e6974d66e12ac20480b</container> </requirements> <command detect_errors="aggressive"> <![CDATA[ + #if $additional: + additional=${additional} && + #else + additional=noAdditionalPlantOrConfig && + #end if #if str( $IterUsmX.IterUsmX ) == 'usmx_one_after_other': parallel=${$IterUsmX.parallel} && #else parallel=parallel && #end if - bash $__tool_directory__/redelacSticsInputGenerator.bash ${IterUsmX.IterUsmX} \${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} ${GeneratedWorkspace} + bash $__tool_directory__/redelacSticsInputGenerator.bash ${IterUsmX.IterUsmX} \${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${Climat} ${USMs} ${Tec} ${Ini} ${Station} \${additional} ${GeneratedWorkspace} ]]> </command> <inputs> @@ -20,7 +25,7 @@ <param name="Tec" type="data" format="csv" label="Select the Tec sheet (csv)"/> <param name="Ini" type="data" format="csv" label="Select the Ini sheet (csv)"/> <param name="Station" type="data" format="csv" label="Select the Station sheet (csv)"/> - <param name="Tag" type="text" value="" label="Outputs tag"/> + <param name="additional" type="data" optional="true" format="zip" label="[optional] Select a zipped archive with folder plant (and or) config (zip file)"/> <conditional name="IterUsmX"> <param name="IterUsmX" type="boolean" checked="true" truevalue="usmx_one_after_other" falsevalue="usmx_at_once"/> <when value="usmx_one_after_other"> @@ -32,7 +37,7 @@ </inputs> <outputs> <data format="zip" name="GeneratedWorkspace" - label="GeneratedWorkspace${Tag}"> + label="GeneratedWorkspace$"> </data> </outputs> <tests>