Mercurial > repos > siwaa > redelac_stics_g

view redelacSticsInputGenerator.bash @ 6:bb1ac57f8545 draft

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"planemo upload for repository https://forgemia.inra.fr/redelac commit 5c06627ff4fa4a31f7fae2cd625f32a29ed2d773"
author siwaa
date Fri, 07 Jul 2023 10:19:22 +0000
parents 4f8d87b9c246
children fb6f7d60508d
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cp -r /home/rstudio/JavaSTICS-1.5.1-STICS-10.0.0/JavaSTICS-1.5.1-STICS-10.0.0 . &&
rm -rf JavaSTICS-1.5.1-STICS-10.0.0/config &&
cp -r $1/config JavaSTICS-1.5.1-STICS-10.0.0 &&
unzip $2 -d TMP &&
export WSname=$(ls TMP) &&
mv TMP/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_gen.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
cp JavaSTICS-1.5.1-STICS-10.0.0/config/param_newform.xml JavaSTICS-1.5.1-STICS-10.0.0/WS &&
unzip $3 -d TMPbis &&
mv TMPbis/*/* JavaSTICS-1.5.1-STICS-10.0.0/WS &&
cp $4 JavaSTICS-1.5.1-STICS-10.0.0/WS/USMs.csv &&
cp $5 JavaSTICS-1.5.1-STICS-10.0.0/WS/Tec.csv &&
cp $6 JavaSTICS-1.5.1-STICS-10.0.0/WS/Ini.csv &&
cp $7 JavaSTICS-1.5.1-STICS-10.0.0/WS/Station.csv &&
cd JavaSTICS-1.5.1-STICS-10.0.0 &&
Rscript --verbose $1/redelacSticsInputGenerator.R &&
rm WS/1* &&
mv WS $WSname &&
zip -r $WSname $WSname &&
cp $WSname.zip $8