Mercurial > repos > siwaa > redelac_stics_s

comparison redelacSticsSimulator.xml @ 7:2586f7dbcde1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/af2d1fcb63a2ae897e02f11e82cc76c4f6e8ca5e/tools/REDELACSticsSimulator commit af2d1fcb63a2ae897e02f11e82cc76c4f6e8ca5e-dirty"
author siwaa
date Mon, 02 Oct 2023 13:51:01 +0000
parents 41f652e6616f
children 806bf835c109
comparison
equal deleted inserted replaced
6:41f652e6616f 7:2586f7dbcde1
1 <tool id="redelacSticsSimulator" name="redelacSticsSimulator" version="1.0.3"> 1 <tool id="redelacSticsSimulator" name="redelacSticsSimulator" version="1.0.4">
2 <description>to run sequences paralelly [Stics-10.0.0]</description> 2 <description>to run sequences paralelly [Stics-10.0.0]</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrpacks:28483bbc8a70159a36bccc30e2270284ea4388e3</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrpacks:69b14ab2616cfea4afc36e6974d66e12ac20480b</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 <![CDATA[ 7 <![CDATA[
8 bash $__tool_directory__/redelacSticsSimulator.bash ${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${SuccessionPlan} ${SimulatedWorkspace} ${SimulationResults} 8 bash $__tool_directory__/redelacSticsSimulator.bash ${parallel} \${GALAXY_SLOTS:-4} ${Scenario} $__tool_directory__ ${Workspace} ${SuccessionPlan} ${SimulatedWorkspace} ${SimulationResults}
9 ]]> 9 ]]>
10 </command> 10 </command>
11 <inputs> 11 <inputs>
12 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace(zip file)"/> 12 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace(zip file)"/>
13 <param name="SuccessionPlan" type="data" format="csv" label="Select a plan of succession (csv)"/> 13 <param name="SuccessionPlan" type="data" format="csv" label="Select a plan of succession (csv)"/>
14 <param name="Tag" type="text" value="" label="Outputs tag"/> 14 <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/>
15 <param name="parallel" type="boolean" checked="true" truevalue="parallel" falsevalue="sequential"/> 15 <param name="parallel" type="boolean" checked="true" truevalue="parallel" falsevalue="sequential"/>
16 </inputs> 16 </inputs>
17 <outputs> 17 <outputs>
18 <data format="zip" name="SimulatedWorkspace" 18 <data format="zip" name="SimulatedWorkspace"
19 label="SticsSimulatedWorkspace${Tag}"> 19 label="SticsSimulatedWorkspace">
20 </data> 20 </data>
21 <data format="rdata" name="SimulationResults" 21 <data format="zip" name="SimulationResults"
22 label="SticsOnResults${Tag}"> 22 label="SticsOnResults">
23 </data> 23 </data>
24 </outputs> 24 </outputs>
25 <tests> 25 <tests>
26 <test>
27 <param name="parallel" value="true" ftype="boolean" />
28 <param name="Workspace" value="input/rotx10.zip" ftype="zip" />
29 <param name="SuccessionPlan" value="input/listeUSMsExp10.csv" ftype="csv" />
30 <output name="SimulationResults" ftype="zip" >
31 <assert_contents>
32 <has_archive_member path="analyse_simulations_STICS\/1\/2\/report-2-806_1893-637_NGC1-scenarioName.csv">
33 <has_text text="806_1893-637_NGC1-1-2-BT-NA-1973-BT" />
34 </has_archive_member>
35 </assert_contents>
36 </output>
37 </test>
38 <test>
39 <param name="parallel" value="false" ftype="boolean" />
40 <param name="Workspace" value="input/rotx10.zip" ftype="zip" />
41 <param name="SuccessionPlan" value="input/listeUSMsExp10.csv" ftype="csv" />
42 <output name="SimulationResults" ftype="zip" >
43 <assert_contents>
44 <has_archive_member path="analyse_simulations_STICS\/1\/2\/report-2-806_1893-637_NGC1-scenarioName.csv">
45 <has_text text="806_1893-637_NGC1-1-2-BT-NA-1973-BT" />
46 </has_archive_member>
47 </assert_contents>
48 </output>
49 </test>
26 </tests> 50 </tests>
27 <help> 51 <help>
28 *The usage of this tool is restricted to the user of the stics_authorized group.* 52 *The usage of this tool is restricted to the user of the stics_authorized group.*
29 53
30 *To be granted, apply to the Project Stics Team and then request to SIWAA* 54 *To be granted, apply to the Project Stics Team and then request to SIWAA*