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comparison redelacSticsSimulator.xml @ 10:65c00476f417 draft default tip

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"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/4a2264991516b494ed11d1a7d5260ba543696a04/tools/REDELACSticsSimulator commit 4a2264991516b494ed11d1a7d5260ba543696a04-dirty"
author siwaa
date Fri, 27 Oct 2023 09:15:25 +0000
parents 52877f7c9d6b
children
comparison
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9:52877f7c9d6b 10:65c00476f417
1 <tool id="redelacSticsSimulator" name="redelacSticsSimulator" version="1.0.5"> 1 <tool id="redelacSticsSimulator" name="redelacSticsSimulator" version="1.0.6">
2 <description>to run sequences paralelly [Stics-10.0.0]</description> 2 <description>to run sequences paralelly [Stics-10.0.0]</description>
3 <requirements> 3 <requirements>
4 <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrpacks:b0f76897e1ece4a91ecfc71617fec5ebd04e2bd4</container> 4 <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrpacks:0faa63e7838a2b86369026bf2e628842d7af9863</container>
5 </requirements> 5 </requirements>
6 <command detect_errors="aggressive"> 6 <command detect_errors="aggressive">
7 <![CDATA[ 7 <![CDATA[
8 bash $__tool_directory__/redelacSticsSimulator.bash ${parallel} \${GALAXY_SLOTS:-4} ${Scenario} $__tool_directory__ ${Workspace} ${SuccessionPlan} ${SimulatedWorkspace} ${SimulationResults} 8 bash $__tool_directory__/redelacSticsSimulator.bash ${parallel} \${GALAXY_SLOTS:-4} ${Scenario} $__tool_directory__ ${Workspace} ${SuccessionPlan} ${SimulatedWorkspace} ${SimulationResults} ${compress}
9 ]]> 9 ]]>
10 </command> 10 </command>
11 <inputs> 11 <inputs>
12 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace(zip file)"/> 12 <param name="Workspace" type="data" format="zip" label="Select a stics Workspace(zip file)"/>
13 <param name="SuccessionPlan" type="data" format="csv" label="Select a plan of succession (csv)"/> 13 <param name="SuccessionPlan" type="data" format="csv" label="Select a plan of succession (csv)"/>
14 <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/> 14 <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/>
15 <param name="parallel" type="boolean" checked="true" truevalue="parallel" falsevalue="sequential"/> 15 <param name="parallel" type="boolean" checked="true" truevalue="parallel" falsevalue="sequential"/>
16 <param name="compress" type="boolean" checked="true" truevalue="-6" falsevalue="-0"/>
16 </inputs> 17 </inputs>
17 <outputs> 18 <outputs>
18 <data format="zip" name="SimulatedWorkspace" 19 <data format="zip" name="SimulatedWorkspace"
19 label="SticsSimulatedWorkspace"> 20 label="SticsSimulatedWorkspace">
20 </data> 21 </data>
22 label="SticsOnResults"> 23 label="SticsOnResults">
23 </data> 24 </data>
24 </outputs> 25 </outputs>
25 <tests> 26 <tests>
26 <test> 27 <test>
28 <param name="parallel" value="true" ftype="boolean" />
29 <param name="Workspace" value="input/rotx10.zip" ftype="zip" />
30 <param name="SuccessionPlan" value="input/listeUSMsExp10.csv" ftype="csv" />
31 <output name="SimulationResults" ftype="zip" >
32 <assert_contents>
33 <has_archive_member path="analyse_simulations_STICS\/1\/2\/report-2-806_1893-637_NGC1-scenarioName.csv">
34 <has_text text="806_1893-637_NGC1-1-2-BT-NA-1973-BT" />
35 </has_archive_member>
36 </assert_contents>
37 </output>
38 </test>
39 <test>
40 <param name="compress" value="false" ftype="boolean" />
27 <param name="parallel" value="true" ftype="boolean" /> 41 <param name="parallel" value="true" ftype="boolean" />
28 <param name="Workspace" value="input/rotx10.zip" ftype="zip" /> 42 <param name="Workspace" value="input/rotx10.zip" ftype="zip" />
29 <param name="SuccessionPlan" value="input/listeUSMsExp10.csv" ftype="csv" /> 43 <param name="SuccessionPlan" value="input/listeUSMsExp10.csv" ftype="csv" />
30 <output name="SimulationResults" ftype="zip" > 44 <output name="SimulationResults" ftype="zip" >
31 <assert_contents> 45 <assert_contents>