Mercurial > repos > siwaa > redelac_stics_s
diff redelacSticsSimulator.xml @ 7:2586f7dbcde1 draft
"planemo upload for repository https://forgemia.inra.fr/redelac/redelac-toolbox/-/tree/af2d1fcb63a2ae897e02f11e82cc76c4f6e8ca5e/tools/REDELACSticsSimulator commit af2d1fcb63a2ae897e02f11e82cc76c4f6e8ca5e-dirty"
author | siwaa |
---|---|
date | Mon, 02 Oct 2023 13:51:01 +0000 |
parents | 41f652e6616f |
children | 806bf835c109 |
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--- a/redelacSticsSimulator.xml Tue Sep 26 15:21:42 2023 +0000 +++ b/redelacSticsSimulator.xml Mon Oct 02 13:51:01 2023 +0000 @@ -1,28 +1,52 @@ -<tool id="redelacSticsSimulator" name="redelacSticsSimulator" version="1.0.3"> +<tool id="redelacSticsSimulator" name="redelacSticsSimulator" version="1.0.4"> <description>to run sequences paralelly [Stics-10.0.0]</description> <requirements> - <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrpacks:28483bbc8a70159a36bccc30e2270284ea4388e3</container> + <container type="singularity">docker://registry.forgemia.inra.fr/redelac/redelac-toolbox/sticsrpacks:69b14ab2616cfea4afc36e6974d66e12ac20480b</container> </requirements> <command detect_errors="aggressive"> <![CDATA[ - bash $__tool_directory__/redelacSticsSimulator.bash ${parallel} \${GALAXY_SLOTS:-4} $__tool_directory__ ${Workspace} ${SuccessionPlan} ${SimulatedWorkspace} ${SimulationResults} + bash $__tool_directory__/redelacSticsSimulator.bash ${parallel} \${GALAXY_SLOTS:-4} ${Scenario} $__tool_directory__ ${Workspace} ${SuccessionPlan} ${SimulatedWorkspace} ${SimulationResults} ]]> </command> <inputs> <param name="Workspace" type="data" format="zip" label="Select a stics Workspace(zip file)"/> <param name="SuccessionPlan" type="data" format="csv" label="Select a plan of succession (csv)"/> - <param name="Tag" type="text" value="" label="Outputs tag"/> + <param name="Scenario" type="text" value="scenarioName" label="Scenario Name"/> <param name="parallel" type="boolean" checked="true" truevalue="parallel" falsevalue="sequential"/> </inputs> <outputs> <data format="zip" name="SimulatedWorkspace" - label="SticsSimulatedWorkspace${Tag}"> + label="SticsSimulatedWorkspace"> </data> - <data format="rdata" name="SimulationResults" - label="SticsOnResults${Tag}"> + <data format="zip" name="SimulationResults" + label="SticsOnResults"> </data> </outputs> <tests> + <test> + <param name="parallel" value="true" ftype="boolean" /> + <param name="Workspace" value="input/rotx10.zip" ftype="zip" /> + <param name="SuccessionPlan" value="input/listeUSMsExp10.csv" ftype="csv" /> + <output name="SimulationResults" ftype="zip" > + <assert_contents> + <has_archive_member path="analyse_simulations_STICS\/1\/2\/report-2-806_1893-637_NGC1-scenarioName.csv"> + <has_text text="806_1893-637_NGC1-1-2-BT-NA-1973-BT" /> + </has_archive_member> + </assert_contents> + </output> + </test> + <test> + <param name="parallel" value="false" ftype="boolean" /> + <param name="Workspace" value="input/rotx10.zip" ftype="zip" /> + <param name="SuccessionPlan" value="input/listeUSMsExp10.csv" ftype="csv" /> + <output name="SimulationResults" ftype="zip" > + <assert_contents> + <has_archive_member path="analyse_simulations_STICS\/1\/2\/report-2-806_1893-637_NGC1-scenarioName.csv"> + <has_text text="806_1893-637_NGC1-1-2-BT-NA-1973-BT" /> + </has_archive_member> + </assert_contents> + </output> + </test> </tests> <help> *The usage of this tool is restricted to the user of the stics_authorized group.*